BtaINT0043635 @ bosTau6
Intron Retention
Gene
ENSBTAG00000038496 | CR2
Description
Bos taurus complement component (3d/Epstein Barr virus) receptor 2 (CR2), mRNA. [Source:RefSeq mRNA;Acc:NM_001198991]
Coordinates
chr16:5280202-5280563:+
Coord C1 exon
chr16:5280202-5280378
Coord A exon
chr16:5280379-5280472
Coord C2 exon
chr16:5280473-5280563
Length
94 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCCA
5' ss Score
3.41
3' ss Seq
TCCTTTTTTTTTTTTCTTAGTGG
3' ss Score
8.95
Exon sequences
Seq C1 exon
ATTGTCAAGCCCCTCCTAAAATCCTCAATGGGCAGAAGGAAGACAGACACAGGGTTCGCTTTGACCCTGGGACATCCATAAAATACAGCTGTGACCTTGGCTATGAGCTGGTGGGAGAAGAATCCATACATTGTACCCCTGATGGAGTGTGGATGCCCACTGCTCCCACATGCAAAG
Seq A exon
GTGCCAGGCTCTGAATTTTGATTTTTTTTTTTTTTTTTTTGGTTTTGAAATGGCCTTCAGTTGATTTCTCATTCTCCTTTTTTTTTTTTCTTAG
Seq C2 exon
TGGCAGAATGTGAACCTGTCGGAAAGCAAGTCTTTAAAAAACCCAAGAACCAATTTATTAGACCAGATGTTAACTCTTCTTGTGATGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000038496:ENSBTAT00000063039:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=95.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGCAGAAGGAAGACAGACA
R:
CGACAGGTTCACATTCTGCCA
Band lengths:
170-264
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development