GgaINT0141331 @ galGal3
Intron Retention
Description
NA
Coordinates
chr26:2482163-2491176:+
Coord C1 exon
chr26:2482163-2482354
Coord A exon
chr26:2482355-2491076
Coord C2 exon
chr26:2491077-2491176
Length
8722 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAAT
5' ss Score
0.76
3' ss Seq
TTAGCCTTGTTCTTTCCCAGGGA
3' ss Score
8.58
Exon sequences
Seq C1 exon
GTGGCTGTGGGGTTCCCACCAGGCTGACCTTTGCTGAGCTCAATGAGGAGCACAGAAATGAGATTGATTTCTCTGTCGGGAAGACTGTGGGATACACCTGTCGGCCCGGATTTGCTAAGCACCCAGGAATGTCACCCACTATTACATGCCTGCAGGGCGGAGTGTGGTCAGAAGCACTCGAGTTCTGTAAAA
Seq A exon
GTGAATAGCTCCTTGATTTGGTGTTGTTGTTCCAGAAGGAATAGGTGCTGGGTTCTGTCCATGCTGCAAAAACCTTAATGTGATTCTGGTGTTCCAATCATATGTGACTAGTAAAGCCATGTAACCTTATGCTATTTGAAACCCATTTTTGGGGGTAATTGGAAATGTGGGTGGATTACTGGAATAGCAGTTGCATTTGTTGGGCTGCACTACAGGGAGAAGCCTACAGGGAGATTCTCTCTCCCACAGGGAAACAGTGCAATCACCCTGGGGAACCCGAGAACGGCCGCATTACAGCCCTGGCAGATCTCTTCTTTGGGTCAACAGTGGTCTACAGCTGTGAGGAAGGGTAAGTCCAGGCTGCAGGTCTGCTTCTCCAAAGGTCAAGGCAGGATGTGTTAGGTAAGTGTCCCTCTTCTCCTTTTCATACATTCATTCTTGATGCATCGATCTTATAAAGAAGCCCAGGTATAGAGCTCTGTACCTATATGAGCACATAGGGTTTTCCCAGACTTTTGCTGTGAAAACGGTACAAAGGTGCTGAGCTTGTAGGCTTCCAGCAGTGCTGAACCCACTGCAGGGGCTGATAGCTCAAACCAAAGTGATTGGAGTGAACGTGAGCCCTTCTACCTCCAGGCACAGGCTGATCGGGCAGTCCAGCCGGCGCTGTGAGATCTCGGGGGGACGCGTTGCATGGACTGGTGACATTCCCATCTGTCAGCGTGAGTAGCTCCCAGCTCGGTGTCTGCATGGTGATGGTACTTGTGTCCCAGCAGCAGCTCCAAAATCTCTCAGTCAGAGCTATCCCTGCTTTGTGGGCATGAAAATATCAGTAGGGTTTGATTTAAGAAGGAAATATACTGGGAAGAAGTACAAGATCTCAGAGCGTGATGGATTATTGAAAGTGAGGAGTCATGGGCAGTGATTTCTCAGCAGCGCCTGTATAGATTTGGCACAGAAGACTTGAGGTTGTTGGATGGTTGTTTTACTTCTTGAACATCAGAAAGGATAAAGCACGTAGGGTCTTCCTCCATAAGAGGAATTGCAGTCGTTCCACCTGTAGGCCAACTGTGTACGCCCCACACACTGTGGGGTTTTGAGTACTTCAGTGCTGTGGTCGGATACAGAAGGTTCGTTGTGCCCCATTGCAGGTATCCCCTGTGAGCCCCCCCCTAACATTCCCCATGGGAAGCACACAGGGCGGCTGCTGGATGAGTTCCTCTATGGCACCTCCATCACCTACAGCTGCGAGCCCGGCTACCCGCTGCGTGGGGCTGCCTCCATCTTCTGCACCACCCATGATGGGAAAAATGGGGTGTGGAGTGGGCCCCCCCCACTGTGCGGAGGTAGGGTTCATGGGGAGCAGGTGGGAGTGCCTGGGTGCAGCAGCTCCAGCCAAACCGCTTTGTGCTTGGAAAGGCAAGGAGACCTCAAGATGGTTGCATGTGTTGTCTGGGTGCCTGCTGGGCAGGGTTTGCTGCTTTGGGGTGGGAATTGTGGTTTTGGGGTGGGATTTGTTGCTTTGGGGCAGGATGTGCTGCTTTGCTTTGGGGCAAAATTTGCTGCTTTTGGGGCAGGTGCAGGCAGGGTTCTGTAGAAGCACACAACATCTGCAGTACTCCCAGCCTCACCTTCCAACTGGGATCTCCCCTGCACTGCTCAGGCAGGGCATCATCAATAGGAAAATTACCTTCAGGCTTGCATCTTGAAAGTGATCACAGATGCAAGTGCTTTGCAGTGCACAGCTGTGCCCGCTCTGAGGTCTGTGCTTCCCTTCCAGAAGCAGGATGCTCTGCCCCTCAAATCCAGAATGGGAGGATAGTGCCAGCTCCTCGGAGCACCTACGCACACAAGGACACTGTCACCTTCGAGTGCGAGCCAGGCTATGTCATCCGCGGCCCCAGAGTGGTGCAGTGCCAGCAGAACAACACCTGGCAGCCCCCAGTGCCCACCTGCGAGCAAGGCAAGTGGCCGGCCAGCACTGCAGGTGCCACCCTGCCCCAGTGTCCCCCGACCCTTTGATAAGGTGTTGGCTTGTGTCCCCGACAGCTGGCTGCAGGGCACCCCCCAGACTGGTGTTTGCTGAGCTGAAGGAGCCCTACAGGAACCAGACTGCCTTCCCCGTGGGTGGGACTGTGGAGTACACGTGCCAGCCTGGCTATGCCCGGCACGTGGGGATGTCACCAACCATCACATGCCTCGGGAATCAGAGCTGGTCTGTGGCACTGGAGTTCTGCAAAAGTGCGTCCTGCATGTGCTGTTGGGAAATTCATACTTCTTGAGTGCAAACCTTTCTGGTTTTGTGGGTTTATTCCTTTGGGGAAGCATGCCGTCTGTCTGAGCATCCCTGGGGGATTTGGTGCACAACGCTGATATGCAGTGCTAACAGCAGCTGTGTCCCCTCACAGGGAAGCAATGTGAGAATCCTGAGGACCCACAGAATGGCAGAGCTGTGGTCCTGACCGACCTCCTCCTTGGGTCCAAAGTGAATTACACGTGTGATGAGGGGTGAGTTTGTGGCCAGCTGAGCTCAGCTGTCATTTGACAGTAAGGCAGAATTTAAGTGACAAAATGGCTTTACATGGAGGAACCTCATAAAGTCTGAAGTCTTGGCTGCTATTAACAAGGCTTGTGAAGAAGTCTGGAGTCTCTTCATGTCATTACCAGTGCTTCTGTGTGATGCAGGTACAAGCTGATTGGGCATTCGCAGAGGACATGCGAGGTCTCTGGCACACGCGTTGCATGGAGCGGGGATGCTCCCATCTGCCATCGTAAGTGGGATGGGAGGGGGCCCTTGGAGATGGCTTCCTTGGGCTGTGTAGCAGGGAGGGGACAATCTTTCAAGGCAAAAGTGCCATTGCAAAAGATTTCTCGGGTCACTCTGTGTGTGAAATATTTCACGTTTCTTATTTCTTATGCTTTGTTTTGTTTCGGATATTTCTGAAATTGTTTCCAAAGGCCTTTTATCTTGGTCCAAACTGGGAGCGCTGTTCATGTTTTAAACTTCCCGTTCCGGTAGCATGAATTCCTCACTGCTCGTGTGCAGGAATGTTTGGTCAGGTTCTCTCTGCGTGAGTCACAGTGGTTATGGACAGGGCAATAAGAACTGTGCCCCCACCTTCAGCCAGGACAGAGAGGAAATGACTGACCCAAGGGCACAAGTTTACCTTCCCACACGTCTCAGGATAATTAAGAAAGCTTAATTGCTGGGATGAGTTTACCCTCATCCATCCCTTCCTGGAAATGGAGGGTCCCAGACCCCAACACTGCAGCAACGATGCTAAAACCTCACATGTGCATCCCCAGGTATTGTCTGTGACCCACCCCCGGACATCCCACATGGAACACACAGTGGGGGATTGATGGATGTCTTCCCCTACATGACCGTGGTCACCTACACATGTGAGCCGGGCCGTGTGTTGGCCGGAACAGCCTCCATCTTCTGCAACACGGTGGATGGGAAGCGTGGTGCGTGGAGCGGGCCGCCGCCACGCTGCGGAGGTGAGTGCTGCAACTATGGTGGGAGGCAGATATTTATTAATGGCGTTCAATGTCTTCCTCCTTTGGTTTCTGAAGGTTATTTTCCATATTTAACAATATTCTCTCCATCCCTTCCGCAGAGGTGCAGTGTCCTCCCCCTCCAAGCATCGCCAACGGGAAGCACAGCAGCCAGCCCTTGGACACGTTCCTGCCTGGTGCAGCTGTTCAGTACACCTGTAAGGATGGCTATATGCTCACTGGGAACGCATCCATCACCTGCACTGCTGCAGGAACCTGGAGCTGGCCCCAGCCACGCTGTGAAGGTATGCCTGTGTCAGCCGCTTGGCACCTGGGTCGTCTCTTTCCTCTTGGCTCTGGGTTTAACCACTACTCACCAAATCCCCACAGAGGAACGGCCAAGGGGTCCCAATATGGAGAATCTCTCAAGCACAACTGGATAATGAGATTTCAGATTCTGGGGGGGAGAGAATAAGAATCAATGTTGTTGACACGCCCATGGTGGTGATGGCCAGGATTGATTGCAGTTACCGCCCTGGCTGGGCTTTGTGTCCCAAATATGCCTCATAATCTTCACTTCCAGCAATAGGCTGCAGAAGACCTGAGATTGAGCATGGAAGAGTGACTGGGCCAAAGTCCATCTATATGCCTGAGGCCATCGCTGTCTTTGAATGTGATTTTGGTTACGCCTTAAATGGCTCTCAGGAGTCTCAGTGCCAGTTTGGGGGCACATGGGATCCTCCTGTCCCCACCTGTGAAAAGAGTAAGTGTAAGTGAGGCGGTGGGTGGTGAGTGACTTCTGAATCCACCCCAGCAGGTGCAACCACCTCACATTGGAGGTAAAGGGACCCTAAGGGCCCCCTTAGGTGGCAGGACAGAAACGGAGGCAGGAGATGGGTGTAGGCAGGGTGGAATCATATCCAAACTTTGGCACCTTTAGCTACTTAGGAACAGCTAATGGGGAAGAAAGAAATAGCAATGCTGCCTCATTACACCGGGTGTAGACCTGGGGTGTAGACCTTCACTGAGTTTGATTTTTCCCCTTCCTGTAGTGGTGCAGTGTCCTTCCCCTCCAAATATCACACACGGTCAGTACAGCAGTGAGGATGTGAGAGTGTTTATCCCCGGAACCTCTGTGAGGTACAAATGTGAACCAGGGTATGTCCTCACGGGGAAAACAGCACTGACTTGTTTGACATCTGGAGTGTGGAGCATCCCTTACCCGCAGTGCAAAGGTGAGCAGAAAGGCTCTGGGCGATGGGCTGCATGCACAGGGGAGCATGGGGGAGTGGGTGGGCAGAGATTTAAAGGCTTCAAGCCCATGCACTCCTTTTTGTGTGGATGCTCCCTGAATTTTGACCTCACAAAAACACAGGGGGAAGCCTGGCTCTGGCAGCCACTTCCCCAGCTCAGACTTTGCTGCTCTTTGCTTCCAGCGGTCACCTGCATGAGCCCTAGCATTAAGCACGGAGAAGTGGCTGAAGGACAGCAAGCTGTCTACCACCCCGGCACCATCATCACCATCCGGTGCCACCCGGGTTACATGCTGCGGGGCAGCCAGGAGCCCAAGTGCCACTCCGATGGCCGCTGGGTCCCCTCTGTCCCCAGCTGCGAGCCAGGTGAGCATGGGCACAGCTGCTGCTGACTCTGTGGGAAGACAGGGGCTGGGCAGCCTTGTCTGGGGACAAGGACACACAGGGATCCATTGCTCCTGCATCATGCAAAACCACTCCAACATCATTCTCTCCTCACACCCTGCTAGCGCTGCCTTGCCCTCCGCCACCCACCATTGCCCATGGCATACATGATGCTGAGCTCGGGGCCAACTTCACCAGTGGAATGTCTGTGAACTACAGCTGCCAGCCCGGCTTCTCCCTGCTTGGAGACCCCTCCATCCAGTGCATGGAAGGGAGCTGGAGCCTCCCATACCCACGCTGTGCAGGTGAGGGGCCGACACAGCACAGCATGGCATGGCATGCAGCCCCCAAGCTACGCTGTGGAAATTTTGGGGGTGAACTGCAATTCCAGCACAGTGCTCTCTCATATCTGAGCCTGCAGACTCCGGCACTCTGAGGCCTACAGCCAATCCCAAAGGATGTGTAGAGGAGTGTGGAAGCATAAAACTGGCTAAATTAAGGGTTTTTAAAGACCATATAAATTTCATGCATGCATCCTTCTGTGCTAAGAGCTATTCATGTAGATAAATGTCAGAACACAGGATAGAAGAGATACTACCATCCCCAGGTTTTGTAGTAGAACCTACCAGTGCTCTTGCTTCTCAGCTGCGTTTCACTGCCAGCCTAATTTCTCCTTTTTTTTTTCCCTGCAGTTGGATGTGGGACACCAACAGTGTTACAGTTCGCTGAGCTAAGCAAGGAGTATAAGAATTGGACTGAGTTTCCAGTTGGGACCACAGTGAAATACACCTGCCAGCCAGGATACGCCAGGCATTCACAGACACCACCCACTATTACGTGCCTTAAAAATCAGACGTGGTCTGAAGCCAAGAAGTTTTGCAGACGTAAGTTTTGCAGATGCTTCTCTGTCGTTGAAATCACAGTGTGACAATGCAAGCCCCGTCGTTTGGTGGATGTTTTTGGTTCCCTACCATGGGGGTTTGATCAGAATCCTAGAACTCCAGTGCCACTTTTCCTTTCATGCTGAGTTAAAGAAGCTGAAAACCATCTCTTATTCTGTCCAGGAAGAAGGTGTGATCATCCAGGAGAACCAGAAAATGGCAGACTTATTGTTACAACAGATCTCCTCTTCGGATCAACAGTGAATTACACCTGTGAAGAAGGGTGAGTCCTGGTCAAACTGTGCTGCTGTGCCCACTGAGGAGACCCAGGGCCACGTGAGCTTGGGTCCATACCTTCAAAATGGTTAAAATGGCAGTGTGCAGTGGCAGGTGGGGTGGTAATTGGTGACTGTGGGAGATGTAACCTCCAAAGACAGTCCCACAGTAACAGGAGTGCTGTTGTTTAACCCCAGGTACAGGCTAGTTGGAGCATCCCAGCGGCACTGCGTGGTTTCGGGCTCTGGGACACGAGTGACATGGACTGGGGACGTTCCCACCTGCCAGAGTAAGTGCACATAGTGGGAGCTGAGCACAGCACAAAGAGGTTCAGAGCAGGGCTTTACTTGAGAAGGGTCTTTCAAAAGACAGAGATCATGACCACAGGGATGGGTTCAACCTCATCCATCCCTTCCTGGAAGTGAAGGGTCCTGCAGTCCGCAGCGCTGCAGCAACAGTGATACTAAAACCCCACATGTGCACCCCCAGGTATCGTTTGTGATCCACCCCCCGACATCCCGCATGGAATGCACAGTGGGCACTCGATGGATGCCTTTCCCTATGCAGCTGTGGTCACATACATGTGTGAGCCTGGCCATGTGCTGGCTGGGACAGCCTCCATCTTCTGCACCACGGTGGATGGGGAGCATGGTGCCTGGAGCGGACCACCACCACACTGTGGAGGTACAGCTTCATGGAGTTATAGAATGGCTTGGGTTGGAAAGGACCTCAAAGATCATCTAGTTCCAACCCCTTTGTTATGAGCAGGGTTGGAATTGTGCACGGAGTCTTTCATTTTTCCATACTTCTTTTTTTTGGTATGGATGGATGGCTTTGCCCTCTTTCCCCAGACGTGCAGTGCTCTCAGCCCCCAGACATTGCCAGTGGGAGGCACAGAAGCCAAGGCATGGCAGTGTTTGTCAGTGGGACGTCTGTTGTCCATGCCTGTGATCCTGGCTATGTGCTCATTGGAGCAGTGCTGCTGAATTGTGCTGCTGCTGGAGTGTGGAGTGACCCTTTCCCTCAACGTGAAGGTGTTTTTGTCACTTGTGGATATGCCAAGGACACAAAGGGATTATGGGAGATGTTGAATTTGCAGAGATTGAGTTCACTAGTAGTAAATGGGAATAGTAAACATAAACAAAAACAAATGAAAAAAAACAAAAACAAACAAACAAAAAAAACAACAACCCAAATTTCCTTCCCTGCAGGGGAGCTGTGTCCTTCCCCACCAGTGATTGACCATGGCCAGCATGATGGCAAGGATGTGGACTTCATCCCTGGGATGTCTGTAAATTACAGCTGTGACCCTGGCTATTCTCTTACTGGAAAAGCAGCTCTGTACTGTACTGACAATGCAAGCTGGAGCAGCCCTCAGCCCCGCTGTGAAGGTGAGCTGCCCGTGCCATCAGTGCCATGAAAGGGAGGACACCATGGTGTTTCAGCAAGAGCCAAGGGCAGAGGGCTGCAGCAGCCTTTGTCAGGCACAGAAGAGCAAATGGGTCAGGATTTAAATCTCCAGACCCCTTCATTCCCTGCATAGCTGCTCCTGGAGTCAGCAAATTGCCACTGCACAGAGCCTGGGCTGCACACCAGCTTGCTTCCAGCATACAGTGGATGCTGTACTCGCTTTGGTGGCACTGTGCAAGCATCCTTCCTACACGTTATCCCATTTGTGCCCTTTTTCAGTCTTTTTCCCTCTCTTTTTAGTGCTACAGTGTCCTTCGCCTCCAAATATTGATGGAGGCAATCACAGCAGCCAGGATGTGGAAGTTTTCTTTCCTGGGATGGCTGTGAACTACAGCTGTGATCCTGGCTACAGCCTGCTGGGGGAGGGATCCATTTACTGCACCGAGTCTGGAAACTGGAGCCTGCCCACTCCTCAGTGTGAAGGTACTGTGGAGGAGCAACAGCTGAAGCCAGGCTGCTTGGGAACCTCCAGGCACACTGATGGACACGATCTCTCTGTGTTCTCCCTCTGGGCAGGTAGCTGCGGTGCTCCTCCGACACTCAGCTATGCTGAGCTGGCCAAGGAGCACCAGAACATGACAGCCTTTCCCGTTGGGAGCACGGTGCGCTACGCCTGCCGCCCAGGATTCATGAGACACCCCACAGTGCTGCCAGCTCTGACGTGCCTCAAAAACCACACGTGGTCTGATGTGCGAGCGTTCTGCAAAAGTGAATAGCTCCATCCGTTTGGTGTTGGTTTTGGAAATGCGTCTAAATTTACACGCATGGGTTTCTAAAGAAATTCTTTGGTACAAAAATGATTCTTACATGGCTTCACTAGTCACATAGTTTGGACAGCTGTTGGTCTTCTATAAAAACCTTTACTGGTGTTTGCATGTGGACAGATCCTTATGATGTTTTCTCATAGCACACTGTAAAACTGCAGGAGAAGAGTTTAAACTTAGCCTTGTTCTTTCCCAG
Seq C2 exon
GGAAAGAATGTAATTATCCAGAAGCACCACAGAATGGCAGAGTTGTTGTTCTGACAGATCTCCTGTTCAGGTCCATCGTGAACTACACATGTGAAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001164:ENSGALT00000001755:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]