BtaINT0043718 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014391 | CRB2
Description
crumbs family member 2 [Source:HGNC Symbol;Acc:HGNC:18688]
Coordinates
chr11:94518109-94519644:+
Coord C1 exon
chr11:94518109-94518274
Coord A exon
chr11:94518275-94518860
Coord C2 exon
chr11:94518861-94519644
Length
586 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
GACGCTCTCTCCCCTCGCAGGTG
3' ss Score
12.75
Exon sequences
Seq C1 exon
CCTGAGCCCTGTCTCAATGGTGGGACTTGCCTCGTCACCTGGAATGACTTCCACTGCACCTGCCCTGCCAACTTCACTGGGCCCACGTGTGCCCAGCAGCTGTGGTGTCCTGGCCAGCCCTGTCTCCCGCCTGCCACCTGTGAGGAGGTCCCTGATGGCTTTGTCT
Seq A exon
GTGAGTGCCTGCCCTGGGCAGCCCACATGCTGGACACCCAAGCTGGCTTAGATCCGTCACCTGCCTCAGGGCTCAGGGACAGTAGACAGGATGGTTGCAGCCTGGAGGAGGAGAGCACTTGCTAGGTTTTCAAGGGCGAATAAGACCTTGGGCAGAGGGAGAGACATATCAGCAAAGGGGCAAAGCACGTGCAAAGGCCTGTGAGGTTTATAAGAACTTGGGACTTTCTGGGGGAGCCATGGGGGAGCCAGCAGGAGAAGCCCATGCTCAGCATTTTAAAAAGAAGACAGTTCAAAGGATTGCAGTGAAGAGCGAGTGGGTGGATTTTCTGAAGGGGTGTTACTGCCTGGTTTGTGACCTGGGGGGCAGCGTGGCTGCCCAGAGTTGGTTCTCTGGAGGTAAGAGAGTTCTATGAGGTACGGGGAACACTTCCTGGGATTAGATCCTAGGTGGGTGTGTGTGCCCCCAGGCCCAAACGGCGGGGGTTGGGGGAGTGGAGGCGGCGAATGGTCCCCACATCACCCAGGTGTGCTTGGGTTGGGGTGGGGGCCGAGAGGCCGTCCTCCGACGCTCTCTCCCCTCGCAG
Seq C2 exon
GTGTGGCGGAGGCCACGTTCCGCGAGGGACCCCCGGCGGAATTCAGCGGGCACAACGCGTCATCGGGCAGCGCTCTCAGCGGCCTCTCGCTGGTCTTCCGCACTCGCGACCCCGAGGCAGGGCTGTTGCGCGCTGAGGACGGCCCGGCCGCCGTGTGGCTGGCGGTGCGCAACGGCTCGCTGGCGGCCGGCGTGCGCAGCGGCGCCGGTTTGCCCCGCGCGGTGCTGCCAGCGCCCGGGCCGCGTGTGGCCGACGGCGCCTGGCACCGCGTGCGCCTGGCCATGGAGCAGCCCGCGGCCGTCGCTTCGCGCTGGCTGCTCTGGCTGGACGGCGCGGCGACGCCGGTGTCGCTGCGTGGCCTGGCCGGCGACCTGGACTTCCTGCGCGGCCCGGGCGCCGCGCGAGTCCTGCTGGCCGAGAACTTCACGGGCTGCCTGGGCCGCGTGGCGCTCGGCGGCCACCCGCTACCCCTGGCGCGCCCGCGGCCCGGCGCGGCCCCCGGCTCCCGCGAGCCCTTCTCGGCCCGGCCCGGAGCGCCCGCCCCGCACCTCGGCTGCAGCGGCGCTCCCGTGTGTGTCCCCTCGCCCTGCCTGCACGGCGGCGCCTGCCGCGACCTCTTCGACGCCTTCGCCTGCGCCTGCGGCCCGGGCTGGGAGGGCCCGCGCTGCGAGGACCGCGCCGACCCGTGTCGCTCGGCGCCCTGCGCCCGCGGCCGCTGCCACGCACACCCAGACGGTCACTTCGAGTGCCGCTGCCCGCCTGGCTTCGCAGGCCCGCGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014391:ENSBTAT00000043337:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.116
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=46.9),PF0000822=EGF=WD(100=11.8),PF0000822=EGF=WD(100=12.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCCCTGATGGCTTTGTCT
R:
TCCAGCCAGAGCAGCCAG
Band lengths:
349-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development