DreINT0051782 @ danRer10
Intron Retention
Gene
ENSDARG00000060081 | crb2b
Description
crumbs family member 2b [Source:ZFIN;Acc:ZDB-GENE-060610-1]
Coordinates
chr8:2837241-2840819:+
Coord C1 exon
chr8:2837241-2837406
Coord A exon
chr8:2837407-2839948
Coord C2 exon
chr8:2839949-2840819
Length
2542 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
3' ss Seq
ATGTTTTGTGTTCACTCCAGGTT
3' ss Score
9.91
Exon sequences
Seq C1 exon
ATGAAGCCGTGTCTGAACGGAGGGAAGTGTCAGGTCATCTGGAATGACTTTATGTGCCTCTGTCCGCTTAACTTCTCTGGAAAGACGTGTGAAACTCGTGTCTGGTGTGTTAGCGACCCCTGTGACCCCAGGACTCGGTGTGTGGATTTACCTGACGGTTATGAGT
Seq A exon
GTGAGTATAAGACTCATTAGTGACTGGATAACAATTAATTGCATTTCGTCTTCACCTTCTGAGGTACTTTATTAGAAAATTTAAAAATGTCCACAGTGGCCTCTCCTACTGCAGCAAACTCTTGATGAAGGGCGAGGCAGTGGCGCAGTAGGTAGTGCTGTCGCCCCACAGCAAGAAGGTCGCTAGTTCGAACCTCGGCTCAGTTGGCGTTTCTGTGTGGAGTTTGCATGTTCTCCCTGCCTTCGCGTGGGTTTCCTCCGGGTGCTCCGGTTTCCCCCACAGTCCAAAGACATGCGGTACAGGTGATTTGGGTAGGCTAAATTGTCGGTAGTGTATGAGTGTGTGTGTGAATGTGTGTGTGGATGTTTCCCAGAGATGGGTTGCGGCTGGAAGGGCATCCGCTGCGTTAAAAACTTGCTGGATAAGTTGGTGGTTCATTCCGCTGTGAATAATAAAGGGACTAAGCCGACAAGAAAATGAATGAATGAATGAATGTTTGGATGAATCTGTGCTTTATTGATGTTTTATTATAATTTTTGCAGACATAAAAAAACAAAGAAGAGACACACAAACCCGTCATGTAACAATAATCTGTACAAAAAGTAAAATAAAGCATGAAACCAGGGAAAATGGCAACATATATGACCTACAAAGAGACGGATGGATGTAAAGAGAAAAAAAAACAACAACTTACAACTCTTTAGAAATGAAACATTAGCCCTTATGTTGTGTTTGAAATTTTTTTTTGCAGAGTTCCCAAAGGTGGCAAAGCTAATTCTTTCCAAATGTAAAGTGGTAAAAATCAGTGAGAAAAGAGAGGCCTAACATTTTTCTTCCAATTGAATGATGTTTTATGCAATTGGAAGGTGACTTGGATGATGTCACGTGACCTGGATGATACATTGGCGTACATTTTGCTCAAACACAGTGGGGTCAGATACATCCTGTGCATAATTGTATAGTTTTGTTCAACTGTTTTACCGGAAATTATTACTGGAAAGGGGAATGAGAGTATTCAGGCATATAGTCTCCCACTGATCCACATTAAAATTAGATTCCAAACCTCTTTGCCACAAATCAGGGCTTGAAATTGCGATCATTTTGGTCGCATATGCGCCCGAAATTCTATTTATGCAACCTTAAAATATATTTGGGAGCATTAGTGCGAGTGCTTAAAATTGTTGTGTGCAACCAGTTTTTACTGCAATATGTTCACCACATGTGCGGATTCAAGACACATTCACGCAGAATGCATCTCTAAGCTCTTTGTCTGCACTTGAAACGCAGCGCTCAGGAATGGTTTGCAACTGTTGTCATGTCAACTTGCTGCAGTAAACAAAGCCAAGTTCATAATGCTTGCCCCGCCTTTGCGCTCTTCTTATTGGCCCACCACTGCTCTAGCTCTGAACACGAATGATTGGTTAATATCAGCTGTCAATCACTCAGTCAGTGCCGTCTGGCTTGGGATGACAGGGAGAGCTGCTACCGCGAAAAACTGTAAAGCGCTGAAGATGAGAATGAAGATAACACTGACAGATTTTGTTATAGAAACCATGGCATATAAAGTTACAAATAATGACACATCTTACTAGTGATTATGTGCTGAATGTTAATCCACCATCTACACTTTTCCAAGAGTGGATAAAAGACTTCCGTTTGCTTCAAGTCCGCTATAAGAAGTCTGTGGGATGGAATCTTCAGGTAACTGTTTGCCACACAGCATATAATCGCCAGATGCTGTCTGCCGTGCAAGTGACAGATATATGCCAAATTCAACACCACGTACACCATCGCAAACGGGCTTGCACTGAGTAAACTAACATCGTTACTCATAAAAAGACCGGTATTACTATGCTAACATGACGTATGCATATAATAAGGTACAGTACATGTCAAAAGCATCAGTGCAATATCAGACAGCACCCGTGAGAACTGCACAGTTATATAGATAACAGATGTATTCATGTCAAGCAGTGTGTGCAGGGCCGGTGAGCGCTCTGTGTACCTTTTAGTCACTCAGTTATGTTATAAAAATCTATTTTCTTGTGATAACGGGATTTTGTTGAGACATATTTTCCTTACGCCTGCATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTTTTTTTTTGCTTGTTAGTTTGATTACTGTTGATTTCAAATGCAATAAATATGTTTGAATAAAACTTGTAGTAACGGTGCTCATAATTGGTGGGTGCGACTAGATTTTGGCTGATGCGCCTACATTTTTAGGAGCACCGGTGCTACCAAGCAAAAAGGTTCATTTGGAGCCCTGCACATTTTTAGGTGCTAATAGACTTCTTTGAAAAACATTTAAAATCTTTCTGACCTCAGACTTTTAAATTGATTTCTTCTGCCGAACACATCTCTGCCTAGCGTCTGCAGTCTTAAAACTCTGCTGTATTCACATTCAGTTTTTGACAGAGCAAATGACTACACTAGCTAAATCCAATGTTTTGTGTTCACTCCAG
Seq C2 exon
GTTTAGCCAACGCCACATTTGAAAACAACGCCCTGAAGTTCAGCGCAAACGGCTCATTTTTTGAGCCTGTGATGAGAATTTCAATGGATCTGCGGACGCGAGAAGAAAACGGGACCATTTTACGCTCCTCCAATGGAATCGAGTTCTTCTGCATGGGGCTACTAAACTCCTCCATCATCGTGAAGTTTCGTGATAGTAATAGTCTTGAAGTTCACGCTTTCATCAGCGACGTCACCGTTTCTGATGGAGAATGGCATAAAGTGGAGCTCTATGCATCCAGCTCGAGAATATCAGCGTTTCGTTGGCACATGTCAATTGATGGAAATCCTGCAGGATTCAGTCTCTCTCCTGCTGGAAATGTAGACTTTTTTAACTCCTCCACTGTGATGCTGGCAGAAAACTACACTGGGTGTTTGGGCGAAGTGCGCATCGGTGGAGTTCACCTATCATTTTTCGGACCTCTAAATGAAGAGGCGCCACAAAAAACTCAATTCATCCGAATCGGTGGGATGCTGGAGCCTCATTTAGGATGCATTGGATCTCCTTTATGTCTTTCCGAGCCCTGCCTGAATAATGGCACGTGCACGGATCTCTTTAATCTTGCCGTGTGTAAATGTGCTCCAGGATGGACCGGCGAGCGCTGCCAGGAGAATATTGACGAATGTGGAGAGCAGCCCTGTGTTCAGGGGTCCTGTCAGGATCTGCTGGGGGATTATGAGTGCCGGTGTCCGGTTGGATTTGGTGGGAAGAACTGTGATGTGGAGGTGGACCAGTGCAAGGATCATCAATGCGAGAATGGAGGGTCATGTGTGGCTACTGTCAGCGGATACACGTGTGTTTGTTTGCCTGGACACACAGGGCCATACTGCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000060081:ENSDART00000084305:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0000822=EGF=PD(90.3=50.0)
A:
NA
C2:
PF0221019=Laminin_G_2=WD(100=40.2),PF0000822=EGF=WD(100=10.7),PF0000822=EGF=WD(100=12.7),PF0000822=EGF=WD(100=10.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]