BtaINT0044254 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003162 | CRYZ
Description
Bos taurus crystallin, zeta (quinone reductase) (CRYZ), mRNA. [Source:RefSeq mRNA;Acc:NM_174025]
Coordinates
chr3:70246971-70247692:+
Coord C1 exon
chr3:70246971-70247021
Coord A exon
chr3:70247022-70247396
Coord C2 exon
chr3:70247397-70247692
Length
375 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
3' ss Seq
CTCGGGTTCGGGTTTCCTAGGGC
3' ss Score
5.36
Exon sequences
Seq C1 exon
GTGCAATCTCGGGGGACGCTCGCAAATTTTGATTTTCCACTCTAGAACCGG
Seq A exon
GTAAGTGGTTTTAAAAGTCCCTCAGTTCAGGATTAGGATTTCCCCAGCGCTCGTCCAAAAGGAACCGAGTTGGATTTTGGCTGCGTTCCTTTCCTGCGCCCCGTCCTCCCGGAGGACGGAGATGAGTTTGTGGCTAAATTACTCCGCACCGGGGGCTGCTATTGATCACCCGTTGGTCACAGGAAGTTTGACTTACTGGTCTGAGAGCCCGGTTTGCTTACTGGCAGGGTCCGCGTTTCGGTCCCACAGCGGGGCGCCCACCCCGCAGCCTCTGCCTGCCTGCCCCCCACTAGTTTCCCCTCGGCCTGGGCTCTGGATTCCTGCGGCCTCTCGCGGCTGCTGTGACCCGCGGCCACTCGGGTTCGGGTTTCCTAG
Seq C2 exon
GGCTCCTTCTCTCCGGTCTTTCCTCCTGCTTTGATGACATCTTGGAGAGAATTGTGTAGACCCCTTCTACCCCGCCATGACCCTCATCTAGAAGACTCTTCAAAAAACAAAATTCCCTGTTAGCACGTCGTTGGGTATTTACACGTTTCTAGAGGAGACTTATCTCAGTGACCAAGGAAGGTGTATTAATGATTCAACCACTGAAGGGCTAAAGTTTGGACTGATTGTCAGCAACTAGTGGAAATGGCTTCCCACGTGGCACAGTGCTAAAGAATCCGCCTGCCAACGTAGGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003162:ENSBTAT00000043686:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAATCTCGGGGGACG
R:
CTACGTTGGCAGGCGGATTC
Band lengths:
342-717
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]