BtaINT0044450 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009739 | CSMD1
Description
CUB and Sushi multiple domains 1 [Source:HGNC Symbol;Acc:HGNC:14026]
Coordinates
chr27:1270552-1274649:-
Coord C1 exon
chr27:1274508-1274649
Coord A exon
chr27:1270740-1274507
Coord C2 exon
chr27:1270552-1270739
Length
3768 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TCAATACTCTTTCCTTTCAGTTT
3' ss Score
9.76
Exon sequences
Seq C1 exon
CAGCGGCGTGCGGAGGGAACCTGACCGGGCCCGCGGGGGTCATCCTGTCCCCCAACTACCCACAGCCCTACCCGCCTGGGAAGGAGTGCGACTGGAGAGTGAGGGTGAACCCGGACTTCGTCATTGCCCTGATATTCAAAAG
Seq A exon
GTACTGTGTTTTGTGGACTCCCTCCTTGTAGCAGGACTTTAAATGTCATACCTGGAGATGAACGCACTCATTATTTCAGAGGGCTTTCAATTTCACATCTAGTGAAGCCCGAGGTCTTGTATCTAAAAGGGATAGCATCCGGCTGCAGGATGACAAACCTGGAAATCAGTTGTTTTGCTTTTCAATGTTCTACTTGAATTAGGATACACATGATGTGGCAGGAATTACTTATAAATACTATCTTGCACACATTTTTGCAATGTATTCCACATGAGGGAGCTTAATTTACAGAATATTCAAGAAAATAAAGGAGTGATTTAGATATACTTGCGGCTTCCCGGTGGCTCAGTGGTAAAGATTCCACCTGCTAGTGCAAGAGAGGAGGGTTTAATCTCCGGGTCAGGAAGAAGTCCTGGAGGAGGAAATAGCCCATTCCAGGATTCTTGCCTGAAAAATCCCATGGACAAAAGGAGCCTGGTGGGCTATAGTCCACGGGGTCACAAAGAGTCAGACACAACTGAGTGACTGACACATGGATATACTTGGTGTAATTTCTCATCAGTGTCTGATATTTCCCTTAGTGCGTGGGTACTAATCCATTTCCAAGTGCATCCTGTCTGACATCCCCAAGGTGGTGTTGTTATTAATAATCATTCAAATACTCAAGACTTGCTAGAACTCTGAAAACACAAATTCCCCACATTTCAATGCTGTAAAGTTTCAATTAATAGACATTAGTGCTTTTTAAAAAATGCTAACTTCTTTCTGCTAAATTAAATGGTAAAAGTTCAAATCATAATATGATTATATTACAAATTAAATTCTATAGAACTATCACATTATTAATATCTGGCATACAATAATCGCATCTTTCCAAATCCCAAGGTATTTTCCAAGTTTACATTTTGACTTTTGAACTAAATAAGGTGATAAAAGAAAAGTGGTTCTATATGCTGTCCTATTGGTCTCAGCTCTCCAAGGCAGAGTGGTCTAATCGTATTTATTTATCTGTCAATTGAACACTTTTCTCTCATTGAGATGTTTATATCAGTATTCCAGGGCTGGCTGTGCTCATCTTCCTCTGCTTTCTCCTCTTGATGAGATCTGACTCAGGGTAATTTTAAACCTCTGTGACTCTGAATTTTAAGTAGTTTGATAAGCCATCACTTCCTGAGTTTACTCAAGCTGCTATAAATTTACCAAATGACGAGTACTTTATTATGCCACTTGGCTATTACACAAAGGCTGTGAACATTTGCTAGGTTATGTTTTTGAGTATCCTCATGATTTTTGTTAATGCTAAATTCTGATGGAGCCTTTCTCAGAACCAGGAGACACCTCTGCTGCCAGGGGATTAAAAGTAAATTAACAATTAAAAGCCTTTTAGAGGGCACAAAACCTTTTTTGTAGGCGTTTCCTGCCTCGGGTCACAGAGAGTGACTCATTATCAAGTTTCCCACAGCGCAAGTCATCTGATAATATATAAGGCAGTTTTATATTATGCAAGTAGTTTTTCACTTAATGTTGTGCACCTCCCTGGAAGAAGGTTGACCTAGAAAATCTCCAAGTTTTCTTCTGATTCTAAGAGTTTGGAATCCTTTGCTGGCTGGGTGTCACAGACACTTGCACGTTTGGGACATCTTCTAAGAAATGGACAGCTTGTGTGTGCTCGGGTGGGACAGTTTTCTGGGACCTCAGCTCCTAGATTTACTGAGTAGACAGAGGGAGGAAGCCAGGGTACCAGCTGGGAGCAGAGATGCTCAAGGACCCTGGCAAAGAGGCTGCTATTGGCACAGGCTGCTCAGGACACGCTTTTAAAGAATGAGACTGCAGTCAGCTGGGGGGTGGGGGGAGCCTGGCAGAGACAGAAACAAAGGGGACAGAGAATGACAGGGCCTGGAGCACATACATGCGAGCTTCAAGGCTCGTCCTGTACTCAGGAGTCTTTGGGGAGGAATGTTTTATCAAAACTTCTGTAGACTTCGGGGTTGATGCCACTCACATATTGGAACCCAAATTGAATTTTGTTTAAAAGCATACCAAACTTAGGCCTACCTATTCTTGGGGTGTGTAGATCCATGCATCTGGTGTAGATAGATATAACACAGGATTTAACCAAAGGCACCATCACTATTTATAGGAATCACTCCAGACCTCAGTGCATACATGATGGGGCATCCAAAGCAGAGGCCAGTTAGAATGTACTTGTTTGTGCCCGATCGAATTTCCATCATTCAGAATAATCTATCATAATAATTACTTCTGCCAGTTATAAGGGTGTCGCATGACCAGAATCTAAAAACATCCTTGTAAACTATTCTAACTGAAATTGTTATTACCATCAAATTCTATTTGGTTACTGCGATTCCTTTTGGCCTCTTTATTCACTCTGCAGTCATTCCAATCTTTTACTTCCTCTTCATTTCCAACTTCAGGGAAATTATCAGATAAACAGGCTCTGAAACCTTTAACAAACTCCTTGAGTAAATGTGCTCACATGGGAGCAAGGGCACCTTGACAGGGAGTAGGGCAGAGAAGTGCAGATGCAGGTATCACACTCATGTGGGGTCCATGGCTGTCCCCCCACGTTGCACGGGGCAGCTTTGGGAGGGACCTAGGGTTCATGCTTTATCACTTGAATCTCCAGATGAATTTGAGCCACTTAAACAACAGCACGTGTTTGTGATAATATCTAAAAATGCCTGACTCTCTCCATCCTTGTATATCCAAATATGCCACCAAAGGAAAGGGAAGACAGTGGAAGCTGCCTGGACTGGTCCACATTAAAGGCCCTGAAGTATCTGACTTAGAGGTGCAGGGACAGAGGAGGGCCAGGCAAAATGGACTACAGCAGTGCCTCTGTCTGGTGTATTTGCTATTCTGACCCCACTCTTAGATGCCTGAACCAAGTTCAATCTTTTACTTGAGAGTAGACGTATGTTTCAAGTTCCCAGATTATTGTCATCCTTATTGTCGTAAATGGCAGAGACATTTAAAACCATATCCCACTTGAGAGCTTTGGACTTTAATTGTCAGACACTGGAAATTATTAGGGTGTTCACAGTACGAGAGAGACAGAAATACAGAGAGTGGGAAGGGGAGAGAGGAAGAAGGAGGGAGAAGGGAGAGAAAATTGGAACATCCAGTCATGGTGAAATAACGTGAGGTTTGACTTCCACACTTTTTAAGGACTGCAAATACTGGCCAAATTACCTAAGCAAGCAGAGACAATTACAATTTTAAAAGTAAAGAACCAAAAATATTTTTGAACTTTAAGAATCATCAGCAACACCAAGGATTAACAGCAGGCAGACTCTTTACCATCTGAGCCACCAGGGAAGCCCAAACACCAAGTATATATATTATTAAACTAAAGATATTTTCACATAAAAATCAAATATCAGTGGAAATACATCACTTCTGAACCCCCTTCCTTTAAACTGCATTCATTAGAAATATCACAGTTACAGGGAAGAGACACTGTATCTATGTCGCAAAGACTCATTTTCCTTTATGTATCTTCAACATCATACTGTATTGAAGATAATGGTTATTATGTACAATACTAATAATATTTGTTATAACTGGTGTCTGTTGTATTTATTGCCATTTTCATTATTATTGCATTTAGCTTTTGGATCATCCTGCTTTTTAAAAGTTAGAATACAAAGGCAAATACAATCGCTGTGTGCTCTCAGAGACTTGATAGTTGGGAAGAAGAGAGACATACAGGAGGTACGGAAACTCATCAATACTCTTTCCTTTCAG
Seq C2 exon
TTTCAACATGGAGCCCAGCTATGATTTCCTGCACATCTATGAAGGAGAGGACTCCAACAGCCCTCTCATTGGAAGTTTCCAGGGCTCTCAGGCCCCAGAAAGAATTGAGAGCAGCGGAAATAGTCTTTTTCTGGCATTTCGAAGCGATGCTTCTGTGGGCTTGTCGGGCTTTGCCATTGAATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009739:ENSBTAT00000012850:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.078
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=91.7)
A:
NA
C2:
PF0043115=CUB=PD(57.5=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]