BtaINT0044522 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112747481-112753164:+
Coord C1 exon
chr3:112747481-112747672
Coord A exon
chr3:112747673-112753025
Coord C2 exon
chr3:112753026-112753164
Length
5353 bp
Sequences
Splice sites
5' ss Seq
TCGGTACGG
5' ss Score
8.77
3' ss Seq
TTGTCTTCCTCTCTCCTCAGCTC
3' ss Score
11.15
Exon sequences
Seq C1 exon
TGTCCACAGCAACATCCTGCAATGACCCAGGGGTCCCCCAGAATGGGAGCCGGAGTGGCGACAGTTGGGAAGCCGGCGACTCCACGGTGTTCCAGTGTGACCCCGGCTACGCGCTGCAGGGAAGCGCGGAGATCAGCTGCGTGAAGATCGAGAACAGGTTCTTCTGGCAGCCCAGCCCGCCGACCTGCATCG
Seq A exon
GTACGGAGCAACTGCAGTGTGACCCCCGCTCCCTGGTCCCACCACTGGTCTCCTCCAGGTCTCCCAGCCCCTTAAGTGGCAGCTGCGTTTGGAGTCTGTCCAGGAGAGTCAGAATAGCTGAAAGGTGCAGCAGCCTCCACATTTACTCTGCTTTGCCTGCATATGTACAGACACACACCACACACACACACACACACTCACAGTCATACACTCACACTCTGTGTCTGTGCGTGTGCTGTGGTGCTAAGTCACTTCAGTTGGGTCCAGCTCTTTGTGACCTTATGGACTACAGCCTGCCAGGCTCCTCTGTCCATGGGATTCTCCAGGCAAGGATACTGGAATGGGTTGCCGTACCCTCCTCCAGGGTATCGTCGCCACCCAGGGATCAAACCTTATGTCTCCTGCATTTGCAGGCGGGTTCTTTACCACTAGCACCATGTGGGAAACCCCACTCACACTCTACACACTACAAATTCTTTCCACTTCAAAATGGTCCCAAATTTTCTGTTTGTCCCTTTTCTCCTGGCCCAGTCCATATTATAGACTGGGAGGAGGACCATGGGTCACCTCGGGTAACAAGGGTCCCCAGGTTCTGAAATGACCCTTCTATTACCGGAAGCACTGGGAGGGCACTCACAGGCCTGGCTGTAAAGGGAAGACCTTTGCTCTTCTTCTTCACAAGGAAATGATTGGTTACCCGGCTTTTGGTTCTCCAGCTCTGTCCTTAGTCCTTAGATTTCCCTACTTGACAGATGAAGAAGTGAAGGGTCTGCAATGTGTCCAAGGTCACGAAGCTTGTGCAGGTTGGGCCCTGAGTAATCAGTCCTGCTCTCTGGCTCCTAAAGGTTGGGAGGAGGAAGGAACTTGAGAGGAGGACAGGAAAGAAAGAGAAATGGATAGAAACAGACATTCCAGGGCCACATGGCTCTTTTCCTCAGGCAAAACAGAGAGTAGCTCTGTACTGTGTCGGCAATGGATGGTAGAAGAGACCAGGAGTCCTGGGCTCCTTACTGCGTGCAGCCCCGACTGGACGTTTCCTCACCAACCTCACTTAGCTTTCCCTGCAGCTCTCTGTAATGAGCACCATCGCCCCATCTTACAGTAGAGGAAACTGAAATTTGGGAACTTTGAGTATCTTGTCTCAAATCACAGAGCCAGGATACGGCAGTGCCAAGAGTCACCCCCACATCAGCCTGAACGCGACGCCTTTCACGCTCCTGACTCCCACCAGGGACTTCCTGAGATGCTCCCCAGCAGTGCCCACCCCGGTGACGCCCAGCCCCCTCTTTGCACACAGGCTCAGTGGGAGGTGCTGTCCAGGCAGCTGAGGACTGGCCTTTGCCGCCCGTGCCCTGCAGCCTGGCGTTGAGGGTGAGCACTGAGTGCTGGCCCTCGGTGGCAGGGAGGACTCACATGGGTGTGTGTGGCAGGAGCTCAGTGCAAGTGCCGTGGACAGGAAGGTGAGGCCTGGGTTTCAGAGCCCTCTCGCTTTTCAACCGCAGCTGCGATCCGCCAAGAGAGCAGAGGATATTGAAGAAGACAGGTCGGGGGGGTTCAGAGATTTGCTGTTTACTAGTTCAGTGGCTGCGGGGAAATTGCTTCAACTCTCTGACCCTCTGTCTCCTCATCTGTAAAGTGAAGGTAAATGTACTTCCCTCGTGGCGTTGTGGGTGAGCCAGCACTAACCCTGACCTCAAGAAATATTCACTTCTCTCCTTCTGTCCTTTCTTCCTCCTTCTTCAAATTCCGCTCTCCTTCCTTCCCTTGTTTGTTTCCTTCTTTCACGTTTTTTGGGCTCCCTTCCCTTCCCCGAACCAGACTTCCATCCGGTGGAGGGAATTCTAGTGAGGCGAGGGGGATGAGGGGGTCAGACGACCTCTCATTCTGCCTTGTCTCAGGCTGGGATTCCTTCCGTTTGTCTTACGGAAAAGCGGGTCCTGACACGAGGCTGTCCCAGCTGGAGCAGGGGGAAGCCCCGAGCTGAGCCGGCAAGAGCAGTGCATGTGTAGCCGGCAGGGCAGAGAGGTTAATTTGGCTTTCATTACCCATTCTCCTGCGCTTGGCGTGGGGAAATATTCCTCACAACTAAATGAGCGTCTGCCTCTTCTGGAAATGACAAGCCCCTCCTCATTTCCAGCTCCCTTGGCCGTCTGCCAGGACAGGTCTGGCTGGCCTTCATGCCCTTTCATTATAGGGAGGAAGCAAAGGAAGGTAACAAGCGTTTGAGAGCATCCTCCCCACCATAGGCGCTGGGCTGGATGTGGCTACATTTTCACAAATGAAATCACTGTGCAGTGAGTTTTCGGATTCCAGCTGCGTGGTTCAAGTCAGCTTCACGAGGACAGGCTATGTGACCTTAGACAAACCACACCATCTCCCTATGCCTCAGTTTCCTGCCCTGTAAAGCAGGGAAGATAATAGTACCCAGCTCCTGGGGTTGTGTGGAGGATTGAATAAGCTAATGCTATAAAGCGCTTAGAGCCGTGCCTGGTTCATAGTAAACACTGTGTATGTCAGAGGCCTTCATAGCCATTATTCTTTAATTTTATTTTATAGATAAGAAAACAGGGGCTCAGGGAGGTGGGATAGCTTTGCCCAAAGTCACAACTAGGAGGAGGCCAGATTCGAAATTTGAACCCAGGACTGTATAATGTCAAGATCAATGGTCTTTTCTGCAGCTCTCACCCCTTGATACAGCTGGCCCACTTTTTAGCCACCTGGAATGACCAGTGCCTGTCTCCCTGACTCACACCTGGGCATGGTGATTCGTTAGATCAAGCCTAGATCTGAGGGCAGAGCCTGGCTTCCGTCTCTAACTCATAGTGGGGAGTGGACAGGGCCAGAGTGAGGGCGTGGAGGCCATTGGAAGGGAGACCTGGCTCCTGGGTCCAGCTTGGCATCCCAACCCCAGCTCTGAGTACCCACTGGACAGGATGGGGTGCCACTGGCTTGTCACCAAGGCCTCATTTAGTCTCCAGCAGCTCAGATGTCCTCCTGGCCAATACCTGGGCTAGAAGGGGAAGGGGGACTTTGTGCCCCTCAACCAGCCCCACCCGAGTGGCAGGACCTGACCATCTTGCGGGTGCAGCATCCCAGGAGTCCACCCACAGCCTTGAGGACAACTGGCCAAGTGCGACAAAGCCCACACCAGGGTCCTGGGTGGGAAGCAGATGCCTGACTGCCTGATATTGGGGGGCCATCACACAGGGAGCTGGGCCAAAGCAGGGCCTCAAACCCAAACAGACTGAGAGCATTGGGGGGTTGGTGGAAAAATAGGGGGGGCCAGTTTTGAAACAGGCAGATTCACCCCATCTGTGAAAACTTAAGGGAAGGAACCCCTGGCCTGGGAAGGAAGGCAGAGCCTGGTAGCCCTTGCCCGAACAGAGGGAGCACTGGGAAGATGCCCCAGGAGCTGGGACCACTGCCCTGAGCAGGGCTTTCTGCTCTTCCTGGAAGTACCACTGTGTTTCCTAGGCCAGCCTGGGCAGGGCCACACTCAGTGGACAGGACAGTGTGGTCTTGCTTTGTTAAGTTCAAGGTTTCACCCTGATCAGACAGGCCTCCCGTCTGCCCCATCCACCGAACCATATTGTTTGAAGAAGGATCAATGGAGAAGAAGTGAGTGAGATACAAGACAGACTCAACTCAAGGGACCATCCTCACTCCCAGAAGCTCTTCTCCTGGGTACCCTGCCCCCGCTGGCCTGCAGGGAGGGACAGCACCCCCTATTCCCACTGCCGCCAGTGGCTCCGAGGTAGCACAGGAGCATGGGGGAGGTGATGGGCTTGGGGGCCAGACACATGTGGGTCTGAGTCTCAGAGTGACTCTGGGCAAGTTCCTTGACCTCTCTGAGCCTCAGTTTCCACTTTTCTGAGTCAGGAAGGGTAATCCATAGCTTACCGAGTTGTTATAAGATAGAAATGAGATATGGATATAAAATGCCATATGTCATGTGTGACCTTTAACAGGTGTCCACTGGAGTGTATCTGGTACTCAAGCTGGGACTTGAGAAATATTTCCCACAAGAAAAAGCCCACACTACTCACGATCCCTCAGGTTTTATGTTCAGCCACATTAGGGCTTTTATGGCCTCATCCGAAGACCTACCATTTTTTAAAGAGGCCCCGTTGGGGATTGATCCAGCCCTTTAGGCTCACCCCTCATAAAAGCTACACTGAGGAAGCAAAGCTTAGTTCTGGGACAAGCAAGTGGCTGCTCTGAAGTCCAGTCCTGGATGTACCCTCAGTTCCCAGCTCCACGTCCAGGCCTGGCCCTTCTGCAGGCTCACTGCTTGCCCACTCTACCGCCAACCTTCAGTGGTGCCCTGAGGTTTTCAGACCAAGCCATGTCTAGTCTCAGCCGTCTTTTCCTGTTAACATCCCCATACAACCTCCCAACCTTCACTTTATCAGACCCTCATGCTGTGGTCCAATAACCCAGCCCTTCGGGGGAGAACCAGATTCAGGATCTGGGACTTGCCCCCCCAGGGGCTCCGGATGAGCAGCTTGCTATATTCCCAGCCACCGTCCCACCCTCCCACCTGCTGGAAAGGCCTGTCATCTCAGGGGAGGGGGACCACCGTGGACTAATTGGGGATTTGTAATATTTCCATACAACAGAGGAGCACATGCTCTCTTGGACAAAGGCCTTTGAGAAAATTGGAAGGTATCTGCAGCCCCACGCAGGTGCCAAGAGCACTGGCAGCATAGGAGCCCAGGCACACTTGGCAGACACACGTGGTTGTTTTCTGCTCCTCCTGACATCAAGTGTGCTGGGATTAGTGGTAAATAACCCATAAAGCTCAACCAGAAATGGGATCTGACGCCTTGAAAGGAGACCGAGTATTTCATAAGTCTGAAAGCCTAGTAATGGCTTCACACATGGACGAGGTCCAGTATGCCACATGCTTTCACAGACATCTCCCAAATCTTTACAACCGCTCCATGAAAGAGGTGTTACCTCTGCAAAAGAGGAGAGACACTGAGGTCTAGAAAGGTTAGATAAATTCCCTGAGGTCACACAGCCAGGAAGTGACAGAGCCAGGTATTTTTATTTTTGTTGTTTAATAGCTTAGCGAGCTGAAATCCCTATAACATAAAATTAACCATTAAAAAAGAACATTTCAGTGGCATTTAGTGCACTGAAGTGTTGTGCGAGCCCTTCCTCTCTCCAGTTCCAAACAGCTCCATCACTTTAACGTGAGACCTCACCCCCATGGCACTCCACCCTCCCCTGAGCCTCTGGAACCACGTCCTAACTTAGGTCGATCAGACACAGTCCCTCCTCTACCAGCGCTGATGGAAAGGTGACCAGGTGTCGGGACAGCCTCACCCTTGTCTTCCTCTCTCCTCAG
Seq C2 exon
CTCCCTGCGGGGGAGACCTGACGGGACCATCAGGAGTCATCCTGTCACCAAACTACCCAGAACCCTACCCGCCGGGCAAGGAGTGTGACTGGAAGGTGACCGTCTCGCCAGACTATGTCATCGCCCTGGTATTTAACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784:ENSBTAT00000007609:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.169 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0008415=Sushi=WD(100=87.7)
A:
NA
C2:
PF0043115=CUB=PU(41.5=93.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]