Special

ENSMUSG00000028804 @ mm10

Biotype
protein_coding
Gene Symbol
Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:127987857-128567656:+
Assembly
Other assemblies

GENOMIC BROWSER[edit]


EXPRESSION VALUES[edit]


SPECIAL DATASETS

  • Pre-implantation embryo development
  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types

EVENTS AND AS PROFILES[edit]

Associated events[edit]

Event
Type
Length
Coordinates
Strand
PSI Average
PSI Range
Annotated Functions
Alternative 3'ss
0
NA
+
31.46
26.83
0
Alternative 3'ss
3
chr4:128554855-128554857
+
68.22
26.83
0
Alternative 5'ss
0
NA
+
30.38
34.92
0
Alternative 5'ss
8
chr4:128395083-128395090
+
69.62
34.92
0
Exon Skipping
88
chr4:128296395-128296482
+
49.92
58.01
0
Exon Skipping
125
chr4:128297186-128297310
+
94.69
19.83
0
Exon Skipping
122
chr4:128306363-128306484
+
61.08
87.74
0
Exon Skipping
104
chr4:128321248-128321351
+
61.66
77.23
0
Exon Skipping
113
chr4:128322019-128322131
+
61.93
78.72
0
Exon Skipping
183
chr4:128338515-128338697
+
61.61
63.7
0
Intron Retention
2681
chr4:128549277-128551957
+
8.75
24.86
0
Intron Retention
2103
chr4:128552755-128554857
+
12.94
23.73
0
Intron Retention
2704
chr4:128554921-128557624
+
15.3
26.44
0
Intron Retention
795
chr4:128564225-128565019
+
24.23
38.8
0



Orthologous genes[edit]

Organism Assembly Gene ID Gene Name Orthology Type

Human hg38 ENSG00000121904 CSMD2 1-to-1
Human hg19 ENSG00000121904 CSMD2 1-to-1
Rat rn6 ENSRNOG00000007057 Csmd2 1-to-1
Cow bosTau6 ENSBTAG00000005784 CSMD2 1-to-1
Chicken galGal4 ENSGALG00000002602 CSMD2 1-to-1
Chicken galGal3 ENSGALG00000002602 CSMD2 1-to-1
Zebrafish danRer10 ENSDARG00000001559 csmd2 1-to-1
Fruitfly dm6 FBgn0001083 fw 4-to-1