MmuEX0012905 @ mm10
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:128291379-128369210:+
Coord C1 exon
chr4:128291379-128291456
Coord A exon
chr4:128296395-128296482
Coord C2 exon
chr4:128368884-128369210
Length
88 bp
Sequences
Splice sites
3' ss Seq
CTGTTTTCTTTGCCTTGTAGTAA
3' ss Score
8.21
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACATCTGTGT
Seq A exon
TAACTCAGGTTGGTGTGTCCCAAGGACATAATATGTGTCCAGACCCTGGCATACCTGAAAAGGGAAAAAGACTAGGCTCAGACTTCAG
Seq C2 exon
TTTCCTGCTTCTTCAACTTCACCAGTCCATCCGGGATCGTCCTGTCTCCCAACTACCCTGAAGACTATGGCAACCACCTCCATTGTGTCTGGCTCATCCTGGCCCGGCCTGAGAGCCGCATCCACCTGGCCTTCAATGACATCGACGTGGAACCTCAGTTTGATTTCCTGGTTATTAAAGATGGAGCCACCGCTGAAGCCCCGGTCCTTGGTACCTTCTCGGGAAATCAGCTCCCCTCCTCCATCACCAGCAGTGGCCATGTGGCCCGTCTAGAGTTCCAGACTGACCACTCCACAGGGAAGAGGGGTTTCAACATCACCTTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804_MULTIEX1-1/6=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(29.3=56.7)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAAGGACAATAACCA
R:
CGTCGATGTCATTGAAGGCCA
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types