DreEX6073784 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36821871-36835435:-
Coord C1 exon
chr19:36835358-36835435
Coord A exon
chr19:36828733-36828820
Coord C2 exon
chr19:36821871-36821995
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATCATTTTTGTCTTTTGCAGTGT
3' ss Score
10.84
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
TGAAGAAGATGACAGAGCTGAAGTCCAGAGGGGTGAAGATGCTGCCAAGTAAAGACAACCACAGCAAGATATCAGTTT
Seq A exon
TGTCGCAGATGGGGGTGGCGCAAGGACACAACATGTGCCCAGATCCAGGAATCCCGGAGAGGGGCAAAAGAAAAGGCTCTGATTTCAG
Seq C2 exon
ACGGGGTGCTACTGTGCACTTTTCTTGTGATGAAGGATATGAGCTTCAGGGGTCTAAAAGCATCACCTGTTTGCGAGTTACAGACAGTTATGTTGGATGGAGTGATGACCGGCCGATCTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'12-15,'12-14,13-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.389 A=0.600 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(29.3=56.7)
C2:
PF0008415=Sushi=PD(69.0=93.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAGCTGAAGTCCAGAGGG
R:
CCGGTCATCACTCCATCCAAC
Band lengths:
179-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]