BtaEX0010213 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112575296-112656285:+
Coord C1 exon
chr3:112575296-112575373
Coord A exon
chr3:112580498-112580585
Coord C2 exon
chr3:112655959-112656285
Length
88 bp
Sequences
Splice sites
3' ss Seq
GCTGTTTTTTTGCCTTGTAGTAA
3' ss Score
6.91
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCAAGAAGCAAATTGAGTTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAAGACAACAGCCAGAAGACATCTGTGT
Seq A exon
TAACTCAGGTTGGTGTGTCCCAAGGGCATAATATGTGTCCAGACCCTGGCATACCTGAAAGGGGCAAAAGACTAGGCTCGGATTTCAG
Seq C2 exon
TTTCCTGCTTCTTCAACTTCACCAGCCCTTCTGGGATCGTCCTGTCGCCCAACTACCCAGAGGACTACGGCAACCACCTCCACTGTGTCTGGCTCATCCTCGCCCGGCCCGAGAGCCGCATCCACTTGGCCTTCAATGACATCGACGTGGAGCCTCAGTTTGACTTCCTGGTCATCAAGGATGGGGCCACGGCTGAGGCCCCCGTCCTGGGCACCTTCTCAGGAAACCAGCTCCCCTCTTCCATCACCAGCAGTGGCCACGTGGCCCGTCTCGAGTTCCAGACTGACCACTCCACGGGGAAGAGAGGCTTCAACATCACCTTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784_MULTIEX1-1/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(29.3=56.7)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCAAAGACAACAGCCAGA
R:
CGTCGATGTCATTGAAGGCCA
Band lengths:
180-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development