RnoEX0024854 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146479260-146552053:+
Coord C1 exon
chr5:146479260-146479337
Coord A exon
chr5:146484208-146484295
Coord C2 exon
chr5:146551727-146552053
Length
88 bp
Sequences
Splice sites
3' ss Seq
ACTGTTCTTTTGCCTTGTAGTAA
3' ss Score
7.96
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACGTCAGTGT
Seq A exon
TAACTCAGGTTGGTGTGTCCCAAGGACATAATATGTGTCCAGATCCCGGCATACCTGAAAGGGGAAAAAGACTAGGCTCAGACTTCAG
Seq C2 exon
TTTCCTGCTTCTTCAACTTCACCAGTCCCTCTGGGATCGTCCTGTCTCCCAACTACCCTGAAGACTATGGAAATCATCTTCACTGTGTCTGGCTTATCCTGGCCCGGCCCGAGAGCCGCATCCACCTGGCCTTCAATGACATTGACGTGGAGCCTCAGTTTGATTTCCTGGTCATTAAAGACGGAGCCACTGCTGAGGCCCCGGTCCTTGGTACCTTCTCGGGAAATCAGCTCCCTTCCTCCATAACCAGCAGTGGCCATGTGGCCCGTCTAGAGTTCCAGACTGACCACTCCACAGGGAAGAGGGGCTTCAACATCACCTTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057_MULTIEX1-1/7=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.533 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(29.3=56.7)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGATGCCCAGCAAGGACAAT
R:
ATGTCATTGAAGGCCAGGTGG
Band lengths:
182-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]