GgaEX0003257 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4663636-4670911:+
Coord C1 exon
chr23:4663636-4663713
Coord A exon
chr23:4669540-4669627
Coord C2 exon
chr23:4670787-4670911
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTGCTGTTTTTGCTTTGTAGTAA
3' ss Score
7.3
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
TCAAAAAGCAAATGGAACTGAAGTCCAGAGGGGTGAAGCTGATGCCAAGCAAGAACAGTAACCAGAAGACATCAGTAT
Seq A exon
TAACTCAGGTTGGTGTGTCCCAGGGACATAATATGTGTCCAGACCCTGGGATTCCAGAGAGAGGCAAAAGAATAGGCAACGATTTTAG
Seq C2 exon
GTTAGGCTCCAGCATCCAGTTCACCTGCAACGAGGGCTACGATTTGCAGGGGTCCAAAAGCATCACCTGTAAGAGAGTGAGCGACATCATTGTTGCCTGGAGCGACCACAGGCCAGTGTGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602_MULTIEX1-1/6=C1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.400 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PU(29.3=56.7)
C2:
PF0008415=Sushi=PD(69.0=93.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGAAGTCCAGAGGGG
R:
TCGCTCCAGGCAACAATGATG
Band lengths:
171-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]