GgaEX0028140 @ galGal4
Exon Skipping
Gene
ENSGALG00000002602 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr23:4663636-4699939:+
Coord C1 exon
chr23:4663636-4663713
Coord A exon
chr23:4670787-4670911
Coord C2 exon
chr23:4699613-4699939
Length
125 bp
Sequences
Splice sites
3' ss Seq
CCCTTTGTTCTGTCTGCTAGGTT
3' ss Score
11.83
5' ss Seq
GAGGTAAGA
5' ss Score
10.06
Exon sequences
Seq C1 exon
TCAAAAAGCAAATGGAACTGAAGTCCAGAGGGGTGAAGCTGATGCCAAGCAAGAACAGTAACCAGAAGACATCAGTAT
Seq A exon
GTTAGGCTCCAGCATCCAGTTCACCTGCAACGAGGGCTACGATTTGCAGGGGTCCAAAAGCATCACCTGTAAGAGAGTGAGCGACATCATTGTTGCCTGGAGCGACCACAGGCCAGTGTGCAGAG
Seq C2 exon
TTTCCTGCTTTTTCAACTTCACCACCCCGTCTGGGATCGTGCTGTCGCCGAATTACCCCGAAGAGTACGGGAGCAGCTTGCACTGCGTTTGGTTGATCATAGCTAAACCCGAGAGCCGAATTCATTTGGCTTTCAATGATTTTGACGTGGAGCCTCAGTTTGATTTCCTAGCCGTGAAGGACGGCGGCACCGCGGAGTCTCCGGTGCTGGGCACCTTCTCAGGAAGCCAAATCCCCTCCTCGCTGACCAGCAGCGGCCACGTTGCCAGGCTGGAGTTCCAGACCGACCACTCCATGGAGAAGAGAGGCTTCAACATCACCTTCACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002602_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.370 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PD(69.0=93.0)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACTGAAGTCCAGAGGGG
R:
CGTCCTTCACGGCTAGGAAAT
Band lengths:
249-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]