DreEX0024529 @ danRer10
Exon Skipping
Gene
ENSDARG00000001559 | csmd2
Description
CUB and Sushi multiple domains 2 [Source:ZFIN;Acc:ZDB-GENE-030616-39]
Coordinates
chr19:36814046-36828820:-
Coord C1 exon
chr19:36828733-36828820
Coord A exon
chr19:36821871-36821995
Coord C2 exon
chr19:36814046-36814167
Length
125 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTACTATTCTTGCAGACG
3' ss Score
9.16
5' ss Seq
GAGGTAGGA
5' ss Score
8.24
Exon sequences
Seq C1 exon
TGTCGCAGATGGGGGTGGCGCAAGGACACAACATGTGCCCAGATCCAGGAATCCCGGAGAGGGGCAAAAGAAAAGGCTCTGATTTCAG
Seq A exon
ACGGGGTGCTACTGTGCACTTTTCTTGTGATGAAGGATATGAGCTTCAGGGGTCTAAAAGCATCACCTGTTTGCGAGTTACAGACAGTTATGTTGGATGGAGTGATGACCGGCCGATCTGCAGAG
Seq C2 exon
CTCCCATGTGTGGTGGTCAGCTCCGTGGCCCGAGTGGGATCATCACCTCCCCAAACTTTCCAGTACAATATGACAACAATGCAAACTGTACCTGGATCATCACCGCTTCAGACTCCTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000001559-'13-16,'13-15,15-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.049
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(29.3=56.7)
A:
PF0008415=Sushi=PD(69.0=93.0)
C2:
PF0043115=CUB=PU(33.9=90.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGCAGATGGGGGTGG
R:
CTTGGAGGAGTCTGAAGCGGT
Band lengths:
210-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]