MmuEX0012906 @ mm9
Exon Skipping
Gene
ENSMUSG00000028804 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:MGI Symbol;Acc:MGI:2386401]
Coordinates
chr4:127968623-128046454:+
Coord C1 exon
chr4:127968623-127968700
Coord A exon
chr4:127974430-127974554
Coord C2 exon
chr4:128046128-128046454
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAACACACCTTGTCTCCCAGGTT
3' ss Score
6.68
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACATCTGTGT
Seq A exon
GTTAGGATCCAGCGTCCAGTTCACCTGCAACGAGGGCTATGACCTGCAAGGGTCCAAGAGAATCACCTGCATGAAAGTGAGCGACATGTTTGCAGCATGGAGTGACCACAGGCCGGTCTGCCGAG
Seq C2 exon
TTTCCTGCTTCTTCAACTTCACCAGTCCATCCGGGATCGTCCTGTCTCCCAACTACCCTGAAGACTATGGCAACCACCTCCATTGTGTCTGGCTCATCCTGGCCCGGCCTGAGAGCCGCATCCACCTGGCCTTCAATGACATCGACGTGGAACCTCAGTTTGATTTCCTGGTTATTAAAGATGGAGCCACCGCTGAAGCCCCGGTCCTTGGTACCTTCTCGGGAAATCAGCTCCCCTCCTCCATCACCAGCAGTGGCCATGTGGCCCGTCTAGAGTTCCAGACTGACCACTCCACAGGGAAGAGGGGTTTCAACATCACCTTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028804_MULTIEX1-2/6=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAAGGACAATAACCA
R:
GAGAAGGTACCAAGGACCGGG
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: