RnoEX0024855 @ rn6
Exon Skipping
Gene
ENSRNOG00000007057 | Csmd2
Description
CUB and Sushi multiple domains 2 [Source:RGD Symbol;Acc:1565728]
Coordinates
chr5:146479260-146552053:+
Coord C1 exon
chr5:146479260-146479337
Coord A exon
chr5:146485000-146485124
Coord C2 exon
chr5:146551727-146552053
Length
125 bp
Sequences
Splice sites
3' ss Seq
TAAAACACCTTGTCTCCCAGGTT
3' ss Score
6.74
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
Exon sequences
Seq C1 exon
TCAAGAAGCAGATTGAGCTGAAGTCTCGAGGCGTGAAGCTGATGCCCAGCAAGGACAATAACCAGAAGACGTCAGTGT
Seq A exon
GTTAGGATCCAGCGTCCAGTTCACCTGCAGCGAGGGCTATGACCTACAAGGGTCCAAGCGGATCACCTGCATGAAAGTGAGCGACATGTTTGCAGCTTGGAGTGACCACAGGCCGGTCTGCCGAG
Seq C2 exon
TTTCCTGCTTCTTCAACTTCACCAGTCCCTCTGGGATCGTCCTGTCTCCCAACTACCCTGAAGACTATGGAAATCATCTTCACTGTGTCTGGCTTATCCTGGCCCGGCCCGAGAGCCGCATCCACCTGGCCTTCAATGACATTGACGTGGAGCCTCAGTTTGATTTCCTGGTCATTAAAGACGGAGCCACTGCTGAGGCCCCGGTCCTTGGTACCTTCTCGGGAAATCAGCTCCCTTCCTCCATAACCAGCAGTGGCCATGTGGCCCGTCTAGAGTTCCAGACTGACCACTCCACAGGGAAGAGGGGCTTCAACATCACCTTTACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007057_MULTIEX1-2/7=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.383 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0008415=Sushi=PD(69.0=93.0)
C2:
PF0043115=CUB=WD(100=96.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGCAAGGACAATAACCA
R:
GAGAAGGTACCAAGGACCGGG
Band lengths:
255-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]