BtaINT0044523 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112753026-112757211:+
Coord C1 exon
chr3:112753026-112753164
Coord A exon
chr3:112753165-112757023
Coord C2 exon
chr3:112757024-112757211
Length
3859 bp
Sequences
Splice sites
5' ss Seq
CATGTATGT
5' ss Score
5.71
3' ss Seq
GGGATGTGTTTGTTCCCCAGCTT
3' ss Score
5.8
Exon sequences
Seq C1 exon
CTCCCTGCGGGGGAGACCTGACGGGACCATCAGGAGTCATCCTGTCACCAAACTACCCAGAACCCTACCCGCCGGGCAAGGAGTGTGACTGGAAGGTGACCGTCTCGCCAGACTATGTCATCGCCCTGGTATTTAACAT
Seq A exon
GTATGTACCTTTCCCCCGGGTGGGAGGAGGAGGGCTCAGCGCAGGTAGGGGTGCAGACCTGGGTCGGGGTGAGCATACATACGGCCTCTGTGCTCAGGACTCTATTCCAGGGGAGGTGAAGGAGTCCAGAGGAGGAGAGACACCAGCACTCCTTGAGCATCTCCTGTGCCTGGCTCTGTGCTCTGCGGCTTCATGCCTAGTATCCTCGTATGCGATCCCTGTGCATAGTCACTCAGTCGTGTCTGACTCTTTGAAACCCTTAGGACTGCAGTCCTCCAGGCTCCTCTGTGCATGGGATTTCCCAGGCAAGAGTACTGGACTGGGTTACCATTTCCTCCTCCAGGGGATCTTCCCAATCCAGGGATCAAATCCACGTCTCCTGCATTACAGGCAGATTCTTTACCACTGAGCCAGCTAGGAAGCCCTATTTAATCCTTATGATAATTTATAAAGTACCTATTATTCTTGGTTTGTCTCTCCTTTTTTTTTTAACCTCTGAGGATGGCAAGATTCAGAAATTCAGGGTCGTTTTGCCCCTGCTCTTCTGAATTCTCCCCCTCTGCTCTCACCAGCTTCTCTTACCACCCTCTCCAGTTTAGGAACAGCCCAGGAATCTCTTAGCCACTCCCCCGCCAAGCTCCAACACTATCTCCTTGATTTCCTTTAGAAGCAAACTCTTCACAAGAATCGTCTCTGGTTCCCTCTCCTTTCCTTGCCTCTTGTTCACTCTCAAATCACTGACATCTGGTTTCTGACTCCTTGCTTCCACTGACAACTCCTCTGCACTCCTGGCTGCCAAACCAAACTGCACTTTCCACACTTTGTCCAACCGCCTCTCTTTATCCCTCCCTGCATCCTTCTCCTGCTTTTCCCCTTGGCTTTGTGGACTTACCCGCTCTGGCTCTCCAGCTTCTTCTGGGAGTTTGTGGATTCTTTCTCATGCCCCTCGCCCTCTGCCAGGCTCTGTCACAGGCCCCTCTGTCTGCCCGCCACACCTCCTCCCTGGACAAGCTCATCCACTCTGACGCTTCACTCACGTCTTGTAAACTGGAACTCTAGTCTGCCACCCACGCAGACTCTCTTGTGGGCTGCGGGCTCCATAGCCAACTATTGGACGGTCTCTATCTGATACCTGCAGGCTTCGTGATTACAACACATACAAAACTAATCCCCTTGCTTCTCCCCCTAGATGATCTCTATTCTGAAAATCGGGGGTGACCGCACTGTCCATTTTCACTGCTTCTTCTGTTAGTGGCCAAGGCATAGAGCTTCAGCTGTGTTAACCTTAGCTTTTCCCCTCTTCTCCATCCTCCCACCTATTGTCTTGGTTGATGCCCTTACTGCTTCCTGTCTAGATTACTGCCACAGGCTCCTAACTGGTTCCTCTGCTCCATCTTGCCTTCTGTGCCAGTCTCATCTTTAGCTCCGTGTCGGAGTGATGCTGTCACTGGAAAACGCTGAAATATGCACCTCATTTACCATTTTAACACACAATGATATACTACTCGGCAATAAAAGGAAATGAACTACTGACACGTACAGCAATGTGGATGAGTCTCAAAATATCTCACTGAGCAGCAGAAGACAGACACATGAGTACATAATGTATGATTCCACTTAAATGAAATTTTAGAATCAGCAAAACTGATCCACAGTGATAAAAAGTCAGCTCAATGGTATCTTCTGGGGGTGGGGAAGATCAACTGAGAAGGGCCCCCCCCCGACCGGGAACTTTGGGGGATGGTGAAAACCTTGGGTCTTGATAGACACGTGTCAAAACTGAAGGAGTGGTATCCTTAAGTGCTGATCATTTCAGCATGTATAAATTATACCTCGGTTTAAAAGCAAAGAAAGAAACAGATATATCCCTAGTTTTTTTAATACTTCAAAGTCTCCCTCTTTTCTATAAGAGGGAGACATTGTTTTGGGTTTTAATTTGGGGGTGGGGAGGAGTTGTTTGTTTGGGGTTTTTCTTTTTGGTCCAGTCTTTTGAGTTTCATTTCAAACCATCTGGCCCTGGCCTGCCTCTCCCCTCAGTTCCCCAACGCAGTCCTAACCCTGAGCTCCAGCCAGACTGAACTACTCACAGTTGCCAAGACTATTTCATACTTCGTGACTTTGCTTCTGCTCATCCCCTCACTGTGACTTCCTTTCTCCTCCTTGTCCAATCCCTGAGGATCTTCTAATGCCCCAACACAAACTTCACTCCCATCCTCCCTGATGAACTTGGTGCTGTGTTCCCACTAGCCTGCACAGACTTTAGACTTTGTTGTCTTCATGTCCGTCACTTCCTTCCATAAAACCCCATGGTTGCAGAGACACGAGGGCAGATGGAGGCCTTTTGGAAATGAATCCAAACTGACTCACTCCCAAACCCTTGGTGACCTTTGAAAGAGCAGGTGGAGCAACTGAACTACGGGGGCAAGAAGCCCATACCACCCAGCCGTGGGGGGTGACCCTGCACTGCCAGCAGTGAGAGGGCGCTGTGTAGCAGGGAGCCCAGTGCGTATGTGACTCCACGTCTAGTCCTCCCAGACCCCCTGTCTCTCTGCCAGCTTTATCCCCACCTTTGTCCTAGAGAGTAAATGGCCTCCTGTCTCTGCCATGTCTTAAAGGGTAGAAGCACCATTTGGTTCTCAGTCCAGCCAAGTGGAGGATCTAAATATCCCAACCCTAGGTTGTGAACAAGTTGGCATCAGACCACTGTTCTCCGCAAACCCATTTACTTCTGTGGTTTCCATCTTGGCACCCTTGGTTGGCACCAGTCGCCTTTGTTGGGTGTATACCTAAGAGCGGAAGTGCTGCACTGTGGGGCAGGCATGGGGCAGCATAGGGCAAGCATAGGTTCAGGTCCAGCAGATACTGCAGGACAGTTTCCGCAAGTGGTTGAACCAATTCACACCCCGGCCGGCAGGAGGTGAGCGTTCCAGCGGCTCCACATTCTTGCTGGCCCTTGGTATTTCCCCTCATTTTCATTCAAGCCATTTCAGACACTCAAGAACTCTAAGGCTCAATTTGCTAAGCTAAGAAGGTTTGTAAAATGGGTTGTTTTTTTTTCGTAGACCAAGGTCAGGATTTCTTAGAAAGAGACACCCGTGGGGGAGCCAGGAATGGGGTGAGCTGAAAACTGGCTGGGGGAGGGGGGAAGTGAATGAAGCGAGGGTCCTTCATGAGAATGAGCCCCTTCCTGCCAGTGAATGGCTCCCTGGGTGGCTCTCACCCCTCAGAGAAGCGGGTGCAGCTTAGGACAGTGTAAAGAATAGTAGAGGCAGGTAAGAGGCCTGGCTTCTGGGCCTGCTCTGTGGGTTCTGACCACTCGATGTGTAGAGCTGATAACTGATTTTCCCTTCTGTGCACAGTGTAGTGAATATAGACAACAGTGTTGTTATAATCATCAAACTTGGTAATAGGCTAGATCTTAATTATTCCAACCGCTAAAAAGAAACGATAATTATATGATGTGACAGAGGTGCTAATTATCACTACAAAGGAAATCATATAACAATATATAAATGTAGTCAATCAGCATGTTGTACCCCTCAAATTTATATGCCATGTCAAATATAGTTCAATTTTTTAAAACACCTTCTTTTTTTTAAAAAAAAAAAAGAGGGTGTTAGGCTTTTGGCTCCAGCTTTCTGGACCCTGATGCTAGAATCTGGCGCTCTGTCCAAGCCTGCCTTGTCCATCTTCTCTCTCACTGGGAGGTCGGGCGGGGCCAGGAGGTCTCAGGGATTGGGTGCCTGGGGGCTGGAGGACTTGCTGTGTTGGGGGCCCTGTCCTTTGGTTGAGCCCGAGGCTGGGTACCAGCCTTTATGTGACCTCAGCGGGGTGGGGTTGGGATGTGTTTGTTCCCCAG
Seq C2 exon
CTTTAACTTGGAGCCTGGCTACGACTTCCTCCATATCTACGACGGACGGGACTCTCTCAGCCCCCTCATAGGAAGCTTCTACGGCTCCCAGCTTCCCGGCCGCATCGAAAGCAGCAGCAATAGTCTCTTCCTCGCCTTCCGCAGCGATGCTTCAGTGAGCAACACCGGCTTTGTCATCGACTACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784:ENSBTAT00000007609:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043115=CUB=PU(41.5=93.6)
A:
NA
C2:
PF0043115=CUB=PD(57.5=95.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]