BtaINT0044561 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005784 | CSMD2
Description
CUB and Sushi multiple domains 2 [Source:HGNC Symbol;Acc:HGNC:19290]
Coordinates
chr3:112885807-112889045:+
Coord C1 exon
chr3:112885807-112885880
Coord A exon
chr3:112885881-112888933
Coord C2 exon
chr3:112888934-112889045
Length
3053 bp
Sequences
Splice sites
5' ss Seq
CAGGTAACG
5' ss Score
10.52
3' ss Seq
GACCCGCCATCCCGCCACAGGTT
3' ss Score
7.29
Exon sequences
Seq C1 exon
ACCCCACACTGACCACATGTGTGGACCCCGGCGTGCCGCAGTTCGGGATACAGAACAACTCCCAAGGCTACCAG
Seq A exon
GTAACGAGGTCCACCAAGCTCAGGTCTGTGTGCCTCCTGTCCCTTCCGGTCACTGTCAGTCTCAGAGGACCCAGGGGCCTTCCTCAGGACAGCACTGGTGGGGGGGTGGGGGGGTGGGGGATGAGACATGGGAACCTGAAGAGAGAAAGCAGCCTGTCTCTTTAAGCCGTGCTGCATGGCAGCCCCTCTCCCCACCGCCCACCCACAGAAATGGGCAGGTGTTTCCACCAATCAGAGAAGCTGGTGTGGAAGAGCAGGATTCACGTGTAGCTCCATAGACACTGCTCAGTAGCCCCGTGTGATGGGCACAGGGCGTTCACAGTGAGACAGGTAGACCTCCTGTCCCCAGGGAAGCCATACCCTATGGGGCCCAGACCCAGCAGTCGGAGCAAGCAGGTGCCACGTGGGAGACCCATCCCTGTCAGATACAGGCTCCAGGGACACTTCTCAGAGGGAGCTTCAAAAGGAAAGGATTTGGACCTGGATGGGCCCCTCTGAGCAGAAGGAAGCAGGAAAGGAGGGGGTATGTTCAAGGCAGGATAATGAACAGGAGCCCCCGATGTGCCCAGGGGAATATCAGAGACCACACCGGAAATGGCAGGTCAGGATCTGGCCATGCAGTGGCATTTATTCACTTAGTCCACGTTCAACATGGACTTTGTCCATGCCGTAAACTATTCTAGGCACTAGGAATACAGTGAGAACAAAACAAGCCAAGTGCCTCTAAGGGCTGGTGACGATAAATAAGCAAGATCATTTCTTCAACCAGCCAGCGCTGCTCGTGGCTCAATACACAGGGCTGTGGCGGGGAAGTAGGGGTGCTGTTTTAGGAAGTATAGTGAGGGGAGAGGTTTCCTGAACTTGGACTGTGGTGCCCTTGGTGAGAAGGACGGGCATACCTGGCAGAGTCGGCGGCCAGCGCAGGTTGCAGGACTAGAAAGCAGGCCCACCAGCAGGTCCAGAGGCTAACGAGAGAGGAGAAGGACGTGAAGCCCAAGTGCTAGCCTGGATCTGAAAACCTCCTTCACTTCACTTGGCACTGCCCTGTGAAGTTAAATATTCACACATCCTGTGACCCGGAGGTCCCAGTCATAGAAACCAACCCCGGAGACACTCTCATACATGTTACCAGGAGATGAGGAAAACTATGATGTGGTTACAGGGTGGTTCATCACTCAGCAGTGAGAAGGAAGGAACTATATTGCCACACAACACAGATGAATCTCAGAAACAGAGTACTGAATGTCAAAGGATACTATTTCAAGGAATATTGAAACCAAGAAAGACTGACTCTGTTTAGATATATATGTTCGCATGTGTGATAGCGGGCTTCCCAGATAGCGCTAGTGGTAAAGAACCAACCTGCCGATGCAGGAGAGGCAAGAGACACGGGTTCAATCCCTGGGTTGGAAAGATCCCCTGGAGGAAGACATGGCAACCCACTTCAGTCTTCTTGCTGGGAGAATCCCATGGACAGAGGAGCCTGGTGGGCTACGGTCCTTGGGGTCACAGTGTTGGACACGACTGAAGAGACTTAGCATGCACGCATGCACGTATGTGATAGAATTACTTTTTAACGATGCAAGGAAATGAAAAACACAAAATTGAAGAGATTGGTTATCACTGAAGGAGCCGAGCAACATGACAGAGAAGGAACATGTAGATAGTTACAACCTTATTGATGCTGTTCTAGCCCGTAAGTTGAGTAGCGGGCTCCACTTAAAGTGTCCATTTTATTGTGATGATTCAGGTCTATATATTTGCCATATATTCTTCTTACACACCAAATATCACCTAATAAATTTTAAAAAGAGAAGGGCGTGAACTGGGTCAGGTCAGGCCTTGAGACCATGATAAGCATTTTGAATTTTATTCTCCATGTCACGGGAAACCATTTAAAAGGGACTTAATGTGATCCATCATTTGAACTATCACTCAGAACCCTGAGGTATTAGGGGTTAGGAACGGAAGAACTTAGAAAGGACAGTACTTCAGCGTCTTGAGAGAATGACGAGAGTGGGACTGAGCTGAGCGGGGTAGCGACAGTGGACACAGAGTGCATAGTGGACCTAGAGAGAGTCAAAGGGATCAGGAGGCATTTTGTCGGTAGAGCCAAGAAGACTTATTGATGGATTGGATGGAGGGGCTGAAGGGAAGGGAGGAATCAGCAACGACCCGAGGGTTTTTATTTGCCCAGCTGGGTGTAGAGAGGTGCCATTTGTTGAACAAGGTGATGAAATACAAAAGCGGGCACGGAGGCAGGCTGTGGAAGTTAAGTTTCACCTTGAGTTTGATTTGCTCCCAGGCATCATAGAGACATGTGAGGGTTTTGAGCTGGAAAGCAGTGTGGTCCGAGATGCACTTTAGGAAGCTGAGCTGGCAGCATTGTGCCCCGTGGGTTGGAAATGAGAGATGGAGCTGGTGGTTGCAGGGAATATCAAGTCAGACAGTGAGGGGCTAGTGGAGGGTGAGGGTGAAGCAGGGGGAGAAATGACAGGGAGGGTGGCAATTCTGCTCATGAGATAGTTACAAAGCACAGCTCTAGATTCTACAGGGGACATGTCCTGAAAAGAATTTATACATTCATGGAGGGAAGAGACATGCACAGTAATATTCTACTTCCTGCAGTTCTTCACATGTTAGAAAATGCTTCCAAACCCACCCCCACATTTGTGCGTCACAACATTCCACTATAGTTGTGGGGGGGCTGTTCATCCCAAGTCTGCTCCAGAGGGGCTGAGATGTAGAGAGTTTCGTGCAGCCAGTGGACGCCAGAGCTCACAGCCAGGGTCTTCTGATTCTGAGTCAGGTACTCGGTCCATTGTAGCAGACTGAGTTATACCCCACAAGAGCGTTGACCTGGCCCAGGGAGTTGGGGGAAGCCTTGTGGAAGAGGCATAATGTAAGCTGCCTCAAGGGATAAGTAAGATGTAATCAGGCAGAGAAGCAGAAGGGTGGGTAGCAGTAGGGTGGTGGGGAAGTAAGCAGTCGAGGGATGGGTGTGAAGCATCACTGGATAGAAGGTGATCCTGGGACCCGCCATCCCGCCACAG
Seq C2 exon
GTTGGAAGCACCGTGCTCTTCCGTTGTCAGAAAGGTTACCTGCTCCAGGGCTCCACCTCCAGGACGTGCCTCCCCAACCTGACCTGGAGCGGAACCCCGCCCGACTGTGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005784:ENSBTAT00000007609:68
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0008415=Sushi=PU(32.7=72.0)
A:
NA
C2:
PF0008415=Sushi=PD(63.6=92.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]