BtaINT0045633 @ bosTau6
Intron Retention
Gene
ENSBTAG00000001635 | CUTA
Description
Bos taurus cutA divalent cation tolerance homolog (E. coli) (CUTA), mRNA. [Source:RefSeq mRNA;Acc:NM_001075379]
Coordinates
chr23:7534894-7535527:-
Coord C1 exon
chr23:7535105-7535527
Coord A exon
chr23:7534954-7535104
Coord C2 exon
chr23:7534894-7534953
Length
151 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TGCTCTCTCTTCACCTTCAGGGC
3' ss Score
12.05
Exon sequences
Seq C1 exon
ATGACCCGTACCCCAAAACCCAGATGTTGGCCTCCGAGGAGAGAGTGAAAACTGAGTATTTTGCCTTAAATTTTCCAAGCTTCTCTTGGTTTCAGGAATATTTTCCTTCGGGATGCAGAAGAGGGAGGGCCTGAGTGTTTATGCAAGCTAAGTGTTCCGGGGTGCAGTTTTGCTGGGGTGTTTATACGACCCCGAATCCACCCCCTGCCCTTAGGCCGCTCTGCTGCTGTCGCTGTTTTGGATGCCGACACTGCTGCCTGCAGCCTCTCGCCTTCTGTTGCTACCCCGAGCCCTGCTGTCCATGGCTTCAGGAAGTCCCCCGGCCCAGCCCTCGTCGGCCTCGGGCTCCGCCTATGTCCCCGGCTCGGTCTCTGCGGCCTTTGTCACCTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
Seq A exon
GTGGGGACTTTAGTGTGAAGCGAGGAAAGGTGCTTATGAAGGGAGAGTTGGGGGAGCGCCTCCCGCTGCTTCCCGCCTGTCTCTGGGAATTTTTGCCAGTGCAAAAATCGGGTCATGGGGCCTTTAAACGGTGCTCTCTCTTCACCTTCAG
Seq C2 exon
GGCTGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTTGTCCCTCAGATTACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001635:ENSBTAT00000057488:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
A:
NA
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCTGTCGCTGTTTTGGATG
R:
GAGGGACAAGGTTGACGCAG
Band lengths:
247-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]