MmuINT0044186 @ mm9
Intron Retention
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog (E. coli) [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:27075672-27076037:-
Coord C1 exon
chr17:27075829-27076037
Coord A exon
chr17:27075732-27075828
Coord C2 exon
chr17:27075672-27075731
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
3' ss Seq
TGATCTCGCTTCACCCTCAGGGC
3' ss Score
8.94
Exon sequences
Seq C1 exon
GCCACTCTGCTCCTGTCGTTTCTTTGGATGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAG
Seq A exon
GTGGGGACCTCGGCCAGATGACCTAGAGAGAGCGTTGGGGTTAGGGGAAGGGTGCTGTTTCCGGGTCGTGCACACTCTGATCTCGCTTCACCCTCAG
Seq C2 exon
GGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194-Cuta:NM_026948:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.204 A=NA C2=0.082
Domain overlap (PFAM):
C1:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
A:
NA
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCCGCCTTCTGTTGCTAC
R:
CAGACGCTTCTCTACCACTGC
Band lengths:
182-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: