HsaINT1010359 @ hg38
Intron Retention
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr6:33417251-33417695:-
Coord C1 exon
chr6:33417481-33417695
Coord A exon
chr6:33417311-33417480
Coord C2 exon
chr6:33417251-33417310
Length
170 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
3' ss Seq
GGACTGTCTCTTCACTCCAGGGC
3' ss Score
8.25
Exon sequences
Seq C1 exon
GCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGCCTCCCGCCTTTTGTTGCTACCCCGAGTCTTGCTGACCATGGCCTCTGGAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTTACTTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
Seq A exon
GTAGGGACCTCGATGTGCAGCGAGAAAGGATGATCATGAAGGGACAGTTGGGGGTGGGGCAGAAGAGTGCTGCTTTCTCCTTTCTCCAGCTCTGGAAGCCTGTCTCTGGGCTGCCAGTACAAAAACTGGGGTTATGGGGTACTCTGAATGGGACTGTCTCTTCACTCCAG
Seq C2 exon
GGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514:ENST00000374500:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.201 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=PU(46.2=24.7)
A:
NA
C2:
PF0309110=CutA1=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTTTTGTTTGGATGCCGGC
R:
TCTGAGGGATGAGGTTGACGC
Band lengths:
251-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains