GgaINT0123712 @ galGal3
Intron Retention
Gene
ENSGALG00000001620 | CUTA
Description
NA
Coordinates
chr17:8980547-8983649:+
Coord C1 exon
chr17:8980547-8980695
Coord A exon
chr17:8980696-8983589
Coord C2 exon
chr17:8983590-8983649
Length
2894 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
CCCTCTCCTCTCTCATCCAGGGG
3' ss Score
11.22
Exon sequences
Seq C1 exon
GCAATGACGCTGTCTCTGCTGATGTACCCCATGCTGAGAAGCCTTGCTCTCCAGCTGCACTCTGCCATCACTGGCAGCTACGTCTCTGGGACCCACTCCGTCGTCTTCATCAACTGCCTCAATGAGCAGATTGCCAAGGATATTGCAAG
Seq A exon
GTACTGAGATGCTTCCCCTGCTTGTGTGCTTCAATTGTTTGGAAATGGCTTTTTGCAAAATAAAGCCTTTCCTTGTCCCTGGAAAGGAGCTGCGCTTCTCTGCTGGGTCAGAGCTTTGACACTTCTGCCCAGAAGTGCTCCTGTTCTCCCGTACTCCTCCTCACTCTCTCCCTGTGTCGCAGGTCGACATACCAAGAGCTGTGATCACTAAAAGCAAGCTGACAATTACCTCTGAAGCCAGTGCCACAGTAACACATCAAGCCAACTCCCAATTTATTCCACTGCCTTTCGTTTTTAAGATCTATTAAAGTCATGGCCCTAAATCTCTGCATCCTAACTTGGGTTAAGACCCAGCCCCATGTCCTCTGACATGCCATAGCCCTTCTTCTCTGAACAGCACAGTAACGAATTCCCTGAGAAGTGTTCATGAGGAGGGACAAAGCTCAGTGCGTTAACATAAAAACAAATACAAGTGAAGTGGTCCACAGAAAACACAGAACAGACACTTGTGAGGTATGCCCAAAGCCCACACCCTGCTCACCAAGCAAACTCTGGGAAATGAGGGCTTTACCTTGATATTTTTTTCTCTTTCAATGTATGAGATACATTGCATGATGTTTTGCATGCAGTTTTTCCACATATCCGTCAGTCTCTGACTCAATAGATGGTTTGTTCAAAGCAGTGAAACTGTTGACTGGGGAAATGTTTATGATGGACCATTAAGTTTCCTGCAACACCTTCTCTGAGCTGTTTTCCCTGCTATGCTCTTGCTTGCCAAAAACTCTCCCTGTCCTCTGTAAGAGCGGAGCATTCGCAAGCAGCCATTCAGGAGCTGACCGGCTACTGAAAGGGATTTTGTGTCACCTTAAATACTTCAACTGTATGAAGAAATTCAAGTGGAATAGTATCTGTGCCACTGGATGTCTCCTGAAAAAAAAGAACAACTGTCCATGACTGGTGAAAAGATCCCTCTGTTCCTGAAAACACTTCGTCTTAACAGCTTTGCAAATGTTTTCCACTCTTTGTTCCTTATCTTGCAAGGAAGGGAGAGGAAGTAAATCATTCTCTGTTGCTGAGATCTACGTGCTTTGGTTGTATTTTTTCTGGTGGAGTAATTTTGCCAGGAATTTGGATGAATGAGCAATGGTTGTGAGGGATGACACAGGACTCCTGCATTTATTTTCCCACCCACCTTTTTCTTGGAGCTATCGTGTGCTCTTCCTTCATGTTGCCCAAAGGAGCGCTCTAAAGGATCAGGCTGCAGGGAAATTTTCTGCTGTTTCTAAGGAAAAGGAGATCAGGGTTTGTGGAAACAGGTTTACACCACCTCTAAGAGATAACCTAAAGCCTTCGGAGGAAACTCGTGGCCCACCCAGAGATGTGGCCTCTGCCCCATACCTCCTGTTGGGTGGTTGCATCCCACAGAACTCACTCAACACTGGGGCAGCCCACAAGCTGCTTCAGCCTTGGGCCCGTCTGCATCATTTCCTTGGCTTTTCTGCTTATTAATATTTCATCCATCTCCCTTCAGAGCTTATTGTTTAGAGTGGCGGGGACAAAGAAACACACATTAGGTACCCAACCCAAAGTACCATCTATTATGCAGACGTTCTGCACTGCCCACGTTCAGCATCTCAGTGTTTCCCGTTACCATGGTGGCCGCCTGTTTCCACCCAGCTTGCCAGAACACAGTGCAGGATATCAGTCAGGATCACAGTTTGCTGGGGCAAAGCAGAAGCGATTAGAAGGTAACGAAAAGGCTCCAGCGCTCGAGTGGTTTGGAAGTTGCAGATGGCAAAACAAAGTGATTTGTGCCATGTGTCCTACACGACGAGCACAGCGGGGAGATCTCCATTCGTGCTGCTGCTGTTTGCTGGGCTGCAAATTAACTCAAGATGCTTCACAAGCTTTAAGTGACTCAAGCTGCACGTGGCTGGGGCGCACAGCCTCCTGGCACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAAGATGCTTCACAGCTCTAATGTGAGGCAAGACAGTGCACGTGGCTGGGCGGTAAAAGCCTCCTGGCACAGCTGGCCTCCAGGACACAGCTCCATTCACAGAGGGGACCATGGGGACAGATCTGTGCCAGGCACCACTCCCTGCTGCCAGGGATTGGGGCAGCTTTAGGGATCTGTTCCAGCCCCAGGCCAGGAGGATCTGAGGCAGAGCAGCCCCAGCTGGAGATCACTTTGCTTTCCCAGGGTAATAATTAGCCCCAGTCCATGTCTCCCATCTGCTGCACGAGGCAGCATGAGGGATGTCCCTGTGAGCCACAGCGAGCCAAGCGGCACTGACCCTCTCCTCTCTCATCCAG
Seq C2 exon
GGGCATCATGGACAAGAAGCTGGCTGCCTATGTGAACATCCTGCCCAAGAGCTCGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620:ENSGALT00000038894:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=PU(17.6=36.0)
A:
NA
C2:
PF0309110=CutA1=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]