BtaINT0003587 @ bosTau6
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112125977-112131655:+
Coord C1 exon
chr8:112125977-112126125
Coord A exon
chr8:112126126-112131595
Coord C2 exon
chr8:112131596-112131655
Length
5470 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
ATGCTCTCTCTTTGCTTTAGGGC
3' ss Score
11.02
Exon sequences
Seq C1 exon
ATCCTGACAGCCTCTCTCCTGACATACCCCGTGCTCAGGACCCTCAGCCTGCAGTTCCTTTCCGTTCTCACTGGCAGCTATGTGTCCGGCACGTACTCCATTGTTTTTGTCAACTGTCCCAACGAGCAGATCGCCAGAGATGTTGCCAG
Seq A exon
GTACGGGGAAGGGGCTTACGTACTGCCCCAGGGGGCTCAGGAGCCACCAGGAGGCTCCAGAGGGGCCACTTCGGGACTCTGCTTTTGCTTTTGACAACCCCATCTGTCCAGGGCTGAACTGCACAGCTGTCTAATTGGGGCGACTGGAGAGGCACGCGTGAATGGCCCTTGGATGGATCGTGCTTCTGGGCCTGAAAATGTTGAGTGCTGCCTGGGGGCAGATAAGGGACCTGAGACCCAGAGTGCGAGGTGCCTTGCTCAGATGGAAGCCTGCAGGTTGGGCATTTAACAGTTCTAATTCCTGACCCAGCTGTCTTTATTTTTGGAGATAGTTTTTGCTCAGTCCCAGAGATGTGGACCGAGACAGCAGGAGGAGGAGACCAATTCCAGGTGTTTGGCGAATTACTGAAAGCAGTGGTGGAGAGAGTATGGGTACAGAGTTGAAATCTTGGCTCGGTCTCTTGCTGACTGTGTGACCTCAGGCAGGTTGCTCCTCTTCTCTAAACCTTAGTTTTTGAATTATCATTGTTGAGAGGATTAAATGATACGATATCTGTTCAGTCCTTACTCCAGGAACTCAAATGTAACAGATGCTCAGTAAGGGTTGTATCTGATTTCCACCCCCTCCCCCTCACCCCGTTTGCTTTTTGGCTGCACTGTGCAGCCTGCGGCATATTGGTTCCCGGAATGGGGGTTGAGCCCAGAGCCACGGCAGTGAGAGTCGAGTCCTGACCACTGAGCTACTGGGGAAGTTGCCCCTCCTTTATAACTGCAGCTCTGAAGAGGGTTAGTGGGGCTGAGGGGCAAAACCTTGACTCCTGGCTCCTTTTGCTCGCAGTTCTGCACTCGTGAAGTTTGGTGGTAGTTACAGTGTTCTGTGTGATGAGTCTGGTCTTTGGGGGCACACCGCTTCCAAACTGATGGTCACAGGTTAACTTTGGATTTGATTACATCTTTCCTGCCCCTAACCAGAATGTCTGTTTTTTCCCTTATTAACGTTGCTTTTGGAGAACAGCTCTTGTCTGAATGAGCATGTGATTACTCCAGAAATAGGACCTCAGCTTTTAGCAGCTAGGAATTAAAATCCCTTCTGTGCTTCTGGTATACCCAGGGCCTGTGCTGAACTCACTGGACCCCTGGACCAGCCACTCTGGGTCCTGTCAGGAGCAACTTCAGGTGACATCTGCGAGGTGTTGGGTATTGGGAAGAAAAGGGCTCTAAGGCGTGGATTCTAAATAGCGGAAAGGCCATTTGAGGGGAATGGATTGGTTTCAGCTTGGAGAGAGGTCTCTGCTGTCTTGCATCCAGGGTTGCTGATGAAAAGCAGCAATGGATCTCACTCCTCTGTAGGGGATGTGTTTTCTCTCTGCTAGTTTTTAGGAGTGTATCTTAATGTTCAGTTGTTTACTTTTTAAATATACTCTCTCTACTCTCTATTCGTTCTGCGTCCTTTTCCTGGAACTTCTGTTAGATAGATAGATGTTGAATTTGTTTTCTGTGACTGACTTTATAGTTTTCTTTAGACTGAATTCTATAGTTTCCTTTTCAAGATTTCGAATTGTTTTTAGTAACCAAGTGCTCTTGTTTTGTAATTGTCTGATCTTGTTTTATAGATGCAATAATCTTGTCTTATCTTTCTGCAGATAGTAATTATACTTCAATTTTTTGCAGCTTTATTGAGATATATTGTCATATAACATTGTGTAGGTTTAAGATATACAACATGATGATTTTATATTTGTATATATTGCGAAATGATTATGACAATAAGGTTAGTTAAAACAGCTATCACGTGGTTACTTTTTTTGGTGTGATAAGAACTCTTAAGATCTACTCTTAGCAATTTTCAAGTATACATAATTGTACTTATTTTAAAATCTTGGTTTTGATTGTTTTATTGATTTGTCTTTCTCAAGTAAATTCTTCTTCATTGTTGAATTTGTTTCTCGTGGTGTTTGACTTTCTGCAGATGCTTTCCTCTCTCATCTTCCTGGTGATGCTGACGGGGAAGTGCAGGAGCAGCTGCAGGAGTCGCCCGTGGGCAGCACTAGGCAGGCGGACATTCTGCAGTCTGAATCAGTTCCTAAGAATAATTTATCACCTCAAGAAGTATTTTTAGAAGGGTCACCCTGTATGTTTCAAACTTTGACTATGTTAATGAAAAATTATAATTTTATAATCTTCAAAATTATCCTGCTGGAGGCCAACTAAACCAGATCACTACCAGTTTTTAAAAGACCCGAAGGCTCTTGAACAAGGCAGTCCCCTCTCGCGTTCCCATGCATCTAAGTGCTGCCTGTGTTCTTCAGGGCTCCCATGCCTGTCTCAGCGCTGCCTGTACTCTTCAGGGCTCCCGTGCATGTCTCAGCACTGCCTGTACTCTTCAGGGCTCCCATGCCTGTCTCAGCGCTGCCTGTACTCTTCAGGGCTCCCATGCATGTCTCAGCGCTGCCTGTGTTCTTCAGGGCTCCCATGCATGTCTCGGCACTGCCTGTGTTCTTCAAGGCTCCCATGCCTGTCTTGGCGCTGCTTGTACTCTTCAGGGCTCCCATGCCTGTCTCGGTGCTGCCTGTGTTCTTCAGGGCTCCCATGCATGTCTCAGTGCTGCCTGTACTCTTCAGGGCTCCCATGCATGTCTCAGCGCTGCCTGTGTTCTTCAGGGCTCCCATGCATGTCTCGGCACTGCCTATATTCTTCAGGGCTTCCATGCATGTCTCAGCGCTGCCTGTACTCTTCAGGGCTCCCATGTATGTCTCAGCGCTGCCTGTACTCTTCAGGGCTCCCATGCCTGTCTCAGCGCTGCCTGTGTTCTTCAGGGCTTCCTTAGCTGCCGGCGCATACAGTGTCCTTGCTGTGCTCCGGCGTGGCTACGTCAGAAATGTTCTCTGCTGTCTCTGGCACGGGGTGTAAAAGGAAGATTGCAGGGTGTGTGTGTGTAGCCCACCAGCTGGACTGGAAGTCCCAAGTGGAGTCTCCCTTCAGCTGTTCTGTTCACTGATGATCCAACTGGAGTAGAAGAGAGGCAAATAGATTTCGTTTCCAGGGTTTATAGGAGAGAGTAATAGGTGTGTGGTAGGGAGGGCCCCACAGATGTTAGCTGGCAGGTAGCTCGGCTCTGCCCACAGAACTGGTGCTGGGACCAGGCCTTTCGGCTCCAGTCTGGGGCTCGCTCTTCTCAGTGTTCTTTAGAGGTGCCTCTTGGGTCTGGTTCAGTTCCATTCTGGCTCCTGGTAATGTTCTTAGAGCTCTTCGGTGACAGACACCCTCTAAACTGGAAACGTCTCTAGCTGGGGCCAGGGCGGAAACCTGAGTGCTGGACTAGGAGAGCTGGACGCTGTGTCCTCTTTGCCGACAGCACCACAGATGACCTTAGACACGTCTTCCTTCGCTGGGCCTTGGTCTCTTACATAGGGAAAGGGGATTAGATCAGACCAGGGTCACAGGCACGGGTGTCGACAGGCAGGCTGCTTCAGCCTGCGTGAAGTGGGCTGGGGTGTCATGAAGAAGAATGGCAGTAGTTAGCAAGCCTTGTGTGCCCCAGGTGTGGGAGGAGGGAGAGTGGAAACTGACTGACCCGAGGAGCTCCCGCCATGCCTGGAGGTAGCAGCCCCTGCTCAGCTCTGGCTGAAAGTGACCTTGTAGGACTACGGGTCCAAAATGTTCTAAGATTCATTTTTTGGTGAGAAGCTAGATAATGTGTATTTTTGAATGTAAAGTACCCTAATAGTAAATATTGGTAACAAAGTCAAGATTTTTTTTTAATGCCATGAGAGCCAAACCATGTGTTTGGTCCATGAGCCTCTAGTCTGCGATCTTTGCAGTTTCTGAAGACCCTCGAAGGCCTGCCTTCCGCTTTACTCAGACGAGCACGGGGGCTTGAGCTCCCACTCTGTGACTCACCGCTGGACTTCAGTGTGTGTTTTACCCATCAGCTTGTACATTTGTTTTCTCTCTCTCGTGTTTTTTTTTTCTTTTTCGCCATAGGAGCATTTTGAATAACATAGTCCTCCAGAACGTTACAGTCTTTTTCCCAAGTACAAGTTGCTGTGATTAGTCACCAAGGAGTTCACACTGCCAAAGAGATTGGAGGCCCGTGAAGCAATGGATTATTTTTTTTTCTAAAGGTTTAACTCATTCCTTGTGTTTGCATGTCACTTTCAGAACTAGTGCAATGTGATTTCTCAGCAGATGACTTGATTGAGTGAGCAAGACTTGTAGCAGTTGCTTAAACAAATTTGGGCCGTGTGCCTCTCCTTAGAGTCAGGGATTTATTTACCACCTGGAACTTTCCAAGGGCATGAGGGTGGTGATAATACCACATTAATGTGGAGCCTTAAATAGAACACTGTTCAGCCGGGAACTTGGGAGGAGAGAAAGTAGGTCAGTTCTCTTGGCAGCGGTCAAAGAAAGGAGGGATCAGGGCTCAGGCCTCAGACTCGTTGTATTTGGCAGTGGCCACACACTTCAGAGAACTGAGACGGGCCTCCGTGGCTGATGGCACACCCGAGGCGGGTTTGTCTGGCCTGCCTGATCCCCAGGGCTTAGGGTTTGAGCCTTGGGGACACTTCCCTGCATGGGCGACGCAGTGGTGCTTGTCTCTGTGACACTGCACACTGGTTCAGGCACATTGTACCGTGTTCATCAGGGCCCTGCACAGGAATCAGACTCTCAGAGCAAGAATTCCAGTCTGTGGTCTGTCAAAAAAAAATCCCCAGTGCTTAGAGGTCTGCAAAGGTGGAGATGGTGCTCTTAGGACTGTGGTAGGAAGCATCACAAAAATGAAAAGTGTAAAGAGCCTGTGTTTGCCAGTCGCAGGACAGGATGCCCTTTTTTTGCTTTTTTTTTTGCTTTTCCTTCGAGTTGTATCAGTTCCACATGGTCATCAGACACCTCTGATCTGTAGATATCATGTGAGAGCCTAGCACATATCCAAGAGAGAAGAGGAAAAGAAGTTGACATGATAAAAGGAGTATTTGGTGGTGAAAAGGGTTGGAACCCATCGACTGAATCATTCCTGGTTGTATAGCAGGAGAGTCAAGTTGAGTGAGGTGGTCGTGCCTGTCTTGGATAGGTGCTCAAATACTGATCTCTGGAATGAAAGGAGCTTGCATAAGGTCACACAGCCATCCTGCTGCAGGGCTGGATTGGAATCCAGGTCTTTCTGTTCTCCTTCCAGGGCTAACAGATTCCCATTCCCCAAGCCGACTGGGCCTGTCCTTGAAACAGCCTTTGCATAGCTGCTTCCCTGCTTCTCCCCCTCAGGGAAGGACTTATAAACAGTTCTGTCTGCAGAGGGTCTGTGCATGGCAGTTATGGAATGTACTGGTTTGACTTGGGAGGGGCACTCTAAATGGTTATCTGTTTAGACTTAGGTTTCTTGGGAAACTCCCAGGAACTCCTGTATCCTCTCCCATCTCTTCAGATGCTGGACACTTGCCCCAGTAACCGGCATGCTCTCTCTTTGCTTTAG
Seq C2 exon
GGCTATCCTGGATAAGAAGCTGGCTGCCTCTGTGAACATCCTGCCTAAGGCCTCCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957:ENSBTAT00000022554:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0309110=CutA1=PU(17.6=36.0)
A:
NA
C2:
PF0309110=CutA1=FE(19.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]