BtaEX0000596 @ bosTau6
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1N6Y4]
Coordinates
chr8:112120077-112131655:+
Coord C1 exon
chr8:112120077-112120177
Coord A exon
chr8:112125977-112126125
Coord C2 exon
chr8:112131596-112131655
Length
149 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTCCTGCTGTGCAGATC
3' ss Score
9.72
5' ss Seq
CAGGTACGG
5' ss Score
10.88
Exon sequences
Seq C1 exon
AGCCACACATCCGTATCATTTAGTCATTCAACAAATATTTATTGAACATAATCTGTGCAGGAACCTGTGCTAAATTCTGGGACATCATCTCAGGATCTAAG
Seq A exon
ATCCTGACAGCCTCTCTCCTGACATACCCCGTGCTCAGGACCCTCAGCCTGCAGTTCCTTTCCGTTCTCACTGGCAGCTATGTGTCCGGCACGTACTCCATTGTTTTTGTCAACTGTCCCAACGAGCAGATCGCCAGAGATGTTGCCAG
Seq C2 exon
GGCTATCCTGGATAAGAAGCTGGCTGCCTCTGTGAACATCCTGCCTAAGGCCTCCTCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016957-'1-3,'1-0,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0309110=CutA1=PU(17.6=36.0)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCACACATCCGTATCATTT
R:
GGCAGGATGTTCACAGAGGC
Band lengths:
146-295
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development