RnoEX6016540 @ rn6
Exon Skipping
Gene
ENSRNOG00000018832 | RGD1564854
Description
similar to divalent cation tolerant protein CUTA [Source:RGD Symbol;Acc:1564854]
Coordinates
chr3:13936783-13949208:+
Coord C1 exon
chr3:13936783-13936910
Coord A exon
chr3:13944404-13944549
Coord C2 exon
chr3:13949149-13949208
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTACCATGTAGATC
3' ss Score
9.03
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTGGGGTTGTAGTTCACAGTTACAGCCTAGGGCTAAATCCCCAACACCCCAACACCACCATGGACAGGCCAGAGTCACGGTGCCCTCCACCCGGCTTACTCCGGCTTCCCGTTCTTACATGCCTCCTG
Seq A exon
ATCCTGACAGCTGTTCTGACGTATCCCATGCTCAGGACCCTCAGCCTCTGGCTGCACTCCTCCCTCACCGGAAGCTATGTCTCTGGCTCTTACTCCATCGTTTTTGTCAACTGTCCCAATGAGCAAATTGCCAGAGACATTGCCAG
Seq C2 exon
GACCATCCTGGATAAGAAAATGGCTGCATCTGTGAACATCTTGCCTAAGATCTCTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018832-'1-1,'1-0,5-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.130 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=36.7)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGGGTTGTAGTTCACAGTT
R:
TCTTAGGCAAGATGTTCACAGATGC
Band lengths:
178-324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]