GgaEX0027611 @ galGal3
Exon Skipping
Gene
ENSGALG00000001620 | CUTA
Description
NA
Coordinates
chr17:8978295-8983649:+
Coord C1 exon
chr17:8978295-8978444
Coord A exon
chr17:8980547-8980695
Coord C2 exon
chr17:8983590-8983649
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACTCATGTGTTGCACTGCAGGCA
3' ss Score
7.56
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTCCCGGGCAGCCTGCCCAGCGCAGGCAGAGCAGGTGGAGGCAGCGGGACGCAGCTCTCGCCCGGCCGGGGTATGGAGGCTCTGGGCCCCCGCTGCCCGCTGCCCACCGCCCAGGGCTGCCCCCGGCCGGGCTGCCGCACCGTGCTGCTG
Seq A exon
GCAATGACGCTGTCTCTGCTGATGTACCCCATGCTGAGAAGCCTTGCTCTCCAGCTGCACTCTGCCATCACTGGCAGCTACGTCTCTGGGACCCACTCCGTCGTCTTCATCAACTGCCTCAATGAGCAGATTGCCAAGGATATTGCAAG
Seq C2 exon
GGGCATCATGGACAAGAAGCTGGCTGCCTATGTGAACATCCTGCCCAAGAGCTCGGCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001620_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0309110=CutA1=PU(17.6=36.0)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCAGAGCAGGTGGAGG
R:
GAGCTCTTGGGCAGGATGTTC
Band lengths:
181-330
Functional annotations
There are 0 annotated functions for this event