BtaEX6096944 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001635 | CUTA
Description
Bos taurus cutA divalent cation tolerance homolog (E. coli) (CUTA), mRNA. [Source:RefSeq mRNA;Acc:NM_001075379]
Coordinates
chr23:7534894-7535613:-
Coord C1 exon
chr23:7535572-7535613
Coord A exon
chr23:7535105-7535313
Coord C2 exon
chr23:7534894-7534953
Length
209 bp
Sequences
Splice sites
3' ss Seq
AATCCACCCCCTGCCCTTAGGCC
3' ss Score
9.42
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
ATGAGGCGGGGGCGGGCTCCCACATTCCTGCTCGGCGGAGGG
Seq A exon
GCCGCTCTGCTGCTGTCGCTGTTTTGGATGCCGACACTGCTGCCTGCAGCCTCTCGCCTTCTGTTGCTACCCCGAGCCCTGCTGTCCATGGCTTCAGGAAGTCCCCCGGCCCAGCCCTCGTCGGCCTCGGGCTCCGCCTATGTCCCCGGCTCGGTCTCTGCGGCCTTTGTCACCTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
Seq C2 exon
GGCTGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTTGTCCCTCAGATTACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001635-'1-3,'1-2,3-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.048 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]