MmuEX6076204 @ mm9
Exon Skipping
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog (E. coli) [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:27075672-27076313:-
Coord C1 exon
chr17:27076262-27076313
Coord A exon
chr17:27075829-27076037
Coord C2 exon
chr17:27075672-27075731
Length
209 bp
Sequences
Splice sites
3' ss Seq
CGCCCTCCCCCCTGCTCCAGGCC
3' ss Score
10.3
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CGCGGGCTGCATGAACTGGGGGCGGGCGCCCGGCGTCTTGCTCGGCGGAGGG
Seq A exon
GCCACTCTGCTCCTGTCGTTTCTTTGGATGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAG
Seq C2 exon
GGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194-'1-5,'1-3,3-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.103 A=0.204 C2=0.082
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: