MmuEX6076204 @ mm10
Exon Skipping
Gene
ENSMUSG00000024194 | Cuta
Description
cutA divalent cation tolerance homolog [Source:MGI Symbol;Acc:MGI:1914925]
Coordinates
chr17:26938727-26939368:-
Coord C1 exon
chr17:26939317-26939368
Coord A exon
chr17:26938884-26939092
Coord C2 exon
chr17:26938727-26938786
Length
209 bp
Sequences
Splice sites
3' ss Seq
CGCCCTCCCCCCTGCTCCAGGCC
3' ss Score
10.3
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CGCGGGCTGCATGAACTGGGGGCGGGCGCCCGGCGTCTTGCTCGGCGGAGGG
Seq A exon
GCCACTCTGCTCCTGTCGTTTCTTTGGATGCCAGCGCTACTGCCGGTGGCTTCCCGCCTTCTGTTGCTACCCCGAGCTCTGCTGTCAATGGCTTCTGGAAGCCCTCCGTCCCAGCCCCCTCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCCAACGAAAAAGTCGCCAAGGAGATCGCCAG
Seq C2 exon
GGCAGTGGTAGAGAAGCGTCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024194-'1-5,'1-2,3-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.191 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=25.7)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types