RnoEX0025524 @ rn6
Exon Skipping
Gene
ENSRNOG00000000481 | Cuta
Description
cutA divalent cation tolerance homolog [Source:RGD Symbol;Acc:1303306]
Coordinates
chr20:5532784-5533600:-
Coord C1 exon
chr20:5533522-5533600
Coord A exon
chr20:5532963-5533171
Coord C2 exon
chr20:5532784-5532843
Length
209 bp
Sequences
Splice sites
3' ss Seq
GCCCCCCTCCCCTGCTCCAGGCC
3' ss Score
9.2
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
CAGGTCTGGAGATTCTGGGAAGGCAGGGCTGCTCCTGTCACGTGGTGTGCACTGTTTTCTCGTCACGTGGCTTCTGCAG
Seq A exon
GCCACGCTGCTCCTGTCGTTTCTTTGCATGCCTGCCCTACTGCCGGTGGCTTCCCGCCTTCTATTGCTACCCCGAGCTCTGCTGTCCATGGCTTCTGGAAGCCCTCCGTCCCAGCCGTCGCCGGCCTCGGGCTCCGGCTACGTTCCAGGATCAGTCTCTGCAGCCTTTGTCACTTGTCCGAACGAAAAAGTCGCCAAGGAGATTGCCAG
Seq C2 exon
GGCAGTGGTAGAGAAGCGCCTGGCAGCCTGCGTCAACCTCATCCCGCAGATCACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000481-'0-3,'0-2,3-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.177 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0309110=CutA1=PU(17.6=25.7),PF0079315=DAHP_synth_1=PU(11.8=12.9)
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGATTCTGGGAAGGCA
R:
TGGATGTGATCTGCGGGATGA
Band lengths:
134-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]