DreEX0003469 @ danRer10
Exon Skipping
Gene
ENSDARG00000054288 | CUTA
Description
cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr5:33348418-33359715:-
Coord C1 exon
chr5:33359454-33359715
Coord A exon
chr5:33355860-33356008
Coord C2 exon
chr5:33348418-33348477
Length
149 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTTTTATTTCTGTAGCTT
3' ss Score
9.51
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
CGCTGCAGCTTTGGGACAAGAGCAGACTGTCCAAACTGTCAGACGCTGACTCTGATGGGTTAGTCAGTGAGATGAACCTGTCGGGCGGCGAACACCTGGCGAGCTGAACCAAAAGTTGCGCACTAGACTTCACCCGCAATGTAACTTTTAGTGCCGTGAAATAATTATGCAAGACAACAAACCGGATTACTTTTATCAGCGGAATCCCAAGGACATCATGTCTTCTGCTGTCCCTCGATCAGGATTTGTGGTCTTCTGCGTG
Seq A exon
CTTCTAGTAGTGACTCTCGCCCTATACCCTGTTCTGAGGACACTAGGGGTTCAAATTTACTCTGCCTTCACAGGAAAATATGTGTCAGGATATCACTCACTGTTGCTTGTCAACTGTCCTACTGAACAAACTGCCAGAGACATTGGAAG
Seq C2 exon
AATCATCATGGAGAAAAGGCTGGCAGCATGTGTGAATATATTTCCTCGTACTGCCACTAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054288_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=36.0)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGCTGACTCTGATGGGTT
R:
CTGCCAGCCTTTTCTCCATGA
Band lengths:
248-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]