MmuEX0013636 @ mm9
Exon Skipping
Gene
ENSMUSG00000026870 | D730039F16Rik
Description
RIKEN cDNA D730039F16 gene [Source:MGI Symbol;Acc:MGI:1925246]
Coordinates
chr2:34729916-34741450:+
Coord C1 exon
chr2:34729916-34730111
Coord A exon
chr2:34737812-34737957
Coord C2 exon
chr2:34741391-34741450
Length
146 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTTCTACCATGTAGATC
3' ss Score
9.03
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
GAAAAAGGTGTGTGCAGGGGAAGGAGGCTGCAGCTTAGGCTTCAGTGCCCGCCTCCCCGGCCCGCACCCTACCTGAGGCTGTAGTTCACGGTTACTGCCTAGGGCTAAATCCCCAATCCCCAACACCACCATGGACAGACCGGAATCACGGTGCCCTCCACCGGGCTCCCTCAGGCTCGTCCTTACATGCCTCCTG
Seq A exon
ATCCTGACAGCTGTTCTGATGTATCCCGTGCTCAGGACCTTTAGCCTCTGGCTCCACTCTTCCCTCACTGGGATCTATGTCTCTGGCTCTTATTCCATCGTTTTTGTCAACTGTCCCAATGAGCAAATTGCCAGAGACATCGCCAG
Seq C2 exon
GGCCATCCTGGATAAGAAGATGGCTTCGTCTGTGAACATCTTGCCGAAGACCTCTTCTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026870_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.227 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(31.6=36.7)
C2:
PF0309110=CutA1=FE(35.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAAAGGTGTGTGCAGGGGA
R:
CGGCAAGATGTTCACAGACGA
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: