HsaEX6046649 @ hg38
Exon Skipping
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog [Source:HGNC Symbol;Acc:HGNC:21101]
Coordinates
chr6:33417251-33418122:-
Coord C1 exon
chr6:33417959-33418122
Coord A exon
chr6:33417481-33417695
Coord C2 exon
chr6:33417251-33417310
Length
215 bp
Sequences
Splice sites
3' ss Seq
AATTCGCCTCCTGCTCTCAGGCC
3' ss Score
7.62
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGCGCGCTGTTTTCTAATCACGTGGCTGCCACCCAGGTAAGAAGAGGCCGCTCTTCCTGGGGTTGTTTCTCCGTGTGACGTGTGGCCTTTGAGATCAACTCTCCTGTACCAGCGTAGGCCGCATGAGTGGGGGGCGGGCTCCCGCGGTCCTGCTCGGCGGAGTG
Seq A exon
GCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGCCTCCCGCCTTTTGTTGCTACCCCGAGTCTTGCTGACCATGGCCTCTGGAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTTACTTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
Seq C2 exon
GGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514-'2-12,'2-9,6-12
Average complexity
C2
Mappability confidence:
91%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.201 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(46.2=24.7)
C2:
PF0309110=CutA1=FE(19.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGCTGTTTTCTAATCACG
R:
TGGATGTAATCTGAGGGATGAGGT
Band lengths:
222-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains