HsaEX6046649 @ hg19
Exon Skipping
Gene
ENSG00000112514 | CUTA
Description
cutA divalent cation tolerance homolog (E. coli) [Source:HGNC Symbol;Acc:21101]
Coordinates
chr6:33385028-33386065:-
Coord C1 exon
chr6:33385646-33386065
Coord A exon
chr6:33385258-33385472
Coord C2 exon
chr6:33385028-33385087
Length
215 bp
Sequences
Splice sites
3' ss Seq
AATTCGCCTCCTGCTCTCAGGCC
3' ss Score
7.62
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACGGAAACGGGCGTGCCATTTCCGCGCACGTCTGCAGATGCGGTAGTCGATTGGTCAAGTCTCCCATGGCTCCTCCTTCATCAGGAGGTGGGCAAACCGCGCCATGATAGGGTCGGGATTGGCTGGCTCTGGAGGCGCAGGTGGTCCTTCTTCTACTGTCACATGGTGCGCGCTGTTTTCTAATCACGTGGCTGCCACCCAGGTAAGAAGAGGCCGCTCTTCCTGGGGTTGTTTCTCCGTGTGACGTGTGGCCTTTGAGATCAACTCTCCTGTACCAGCGTAGGCCGCATGAGTGGGGGGCGGGCTCCCGCGGTCCTGCTCGGCGGAGTGGTGAGTGACCGGCCCCGCCCCGCCCCTTCCGGTCCTCGAAGCCTCGACCGCTACCCGCACCCTAAATCCCAGAGGTTGGCCCCCTGAGGT
Seq A exon
GCCTCTCTGCTCCTGTCTTTTGTTTGGATGCCGGCGCTGCTGCCTGTGGCCTCCCGCCTTTTGTTGCTACCCCGAGTCTTGCTGACCATGGCCTCTGGAAGCCCTCCGACCCAGCCCTCGCCGGCCTCGGATTCCGGCTCTGGCTACGTTCCGGGCTCGGTCTCTGCAGCCTTTGTTACTTGCCCCAACGAGAAGGTCGCCAAGGAGATCGCCAG
Seq C2 exon
GGCCGTGGTGGAGAAGCGCCTAGCAGCCTGCGTCAACCTCATCCCTCAGATTACATCCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000112514-'4-10,'4-8,5-10=AN
Average complexity
A_C2
Mappability confidence:
88%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.203 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0309110=CutA1=PU(17.6=25.0),PF0079315=DAHP_synth_1=PU(11.8=12.5)
C2:
PF0309110=CutA1=FE(19.6=100),PF0079315=DAHP_synth_1=FE(26.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGCGCTGTTTTCTAATCACG
R:
TCTGAGGGATGAGGTTGACGC
Band lengths:
303-518
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)