BtaINT0046172 @ bosTau6
Intron Retention
Gene
ENSBTAG00000037559 | CYP2C18
Description
Bos taurus cytochrome P450, family 2, subfamily C, polypeptide 18 (CYP2C18), mRNA. [Source:RefSeq mRNA;Acc:NM_001076051]
Coordinates
chr26:15946366-15950977:+
Coord C1 exon
chr26:15946366-15946542
Coord A exon
chr26:15946543-15950835
Coord C2 exon
chr26:15950836-15950977
Length
4293 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTACATCAAATAACTTATAGGAA
3' ss Score
6.07
Exon sequences
Seq C1 exon
GTCTGCAACACTTTCCCTATTCTCATCGACTATTTCCCAGGGAGTCATAACAAACTATTTAAAAATTTTGCTTATATAAGAAGCTATGTTTTGGAGAAAGTAAAAGAACATCAAGCAACTCTGGACATTAACAATCCTCGGGACTTCATCGATTGTTTCCTGATCAAAATGGAACAG
Seq A exon
GTAAAATGTTGATGACAGATTGGTTATCTATTTGCCTGAATTTTTTTGTTCATTAACTTGTTCTGTACTTATTAGGGATGTTTAATGGTTAGAGGAGAAATGCTTGATTAGCACTTTGGGTACTATTTGTGCATGGATCTGGATTGAGCATCATGGGAGATTTAAAATTGAATAGTTAAATAACTGGGATACATGGACCTTGTCTGTTGGGTACTAATAGGCTAGATGAGAAGAAAGAGAACACACATCTCAGGTGAAATGGAAGTGCAGACAAGTGAGAAATACAAAATACTGAGCCATAATGGGAAAGTGGGTGTGATCATTTCACATAGCATGTGGGAGAGTGAGAAGGAAGGATTTAGCCTGCTTGGGTTTCCTGTATGTCCTGAAGCTTGACGTATATCTTCAAATATTTGCAATAAGTCATCGGGGAGGGAATTTCAGATTGGTAGAATGATGTCATGAGAGGTTCAGAGGTGTTTGTGGTAGAGACTAGGTGGGTAGAAGAGAGAAGCCTTAACTGAGTGTAACCAAAAATGATTCTGGAAAGATATAGAGTTGGAAGTTGGTGTCCTTCAAGTTAACATAAAAGTTGGCATTAGAAATTTTGATTTTTATCTGGTAGATGTATGAACCAGAACAAGAGTAGAATGCAAATAATTACTGGGGAAGATTATCCTGGGAGTTTTGTAGAATGACCGGTACAATGAGAATGGAGCTCAAGGGCCAGCTATGAGATTTTTAATTTCTTTGGACTTTGGCTTGATGAAAGTCTGGAACATGGAAATGCAGAGGATTCTGAAATAAAATCAATCTGTCCATCTTGTCATATTATCAAAGATCCATAAATATTAGTTTTAGTTAGAAGAGAGGATGAGAGCCAAATTATAGGGAGTGTCTGGGAAGTCTCAGTAAAAAGATCAAATTTGTTATCTGAAAAGTTCAACTAAGGAGGGAAAAATTCAGATAGTAAATTTTAATAGTGAATGTGATTAGTGGTAGGGTCAAGTTGAAAATTATGGCAAAAGCAATATAGGTGCCATAAAAAATTTTGTGTAGGTGCAAAGCCGTTCTTGAACTGGGGAAAGGCCGGATCCAGTAAAAGCTGCAAAAAGCACTGTAGAAACTAATTCTAGAGAAAGAAATTTCTTCATCTGAGGCCATGATTATTTTATTCAACCACTTTGTAGCACTGGGCAGAAATGAGAAAACAGTTAGTAGGCTAAAATGGCAAGGAGCCAAAGATGCTGATGAAGATGACATTTGAAGAATTGTTCATGGATTTGCACTGGACTGCTCAAATCATGTGTTTTGAACAGAATGAAGGGAAGCACATGGAGTGGCTTAAAGAAACAGGAGCAAGGAAGAAGCAAATCTGCTCTCTGCTTTCTCTGGTGCTTGGGCAATGATTTTTGTCCTTCTGGGGCCCAGTTGATTTGAGAATCTGATTAAGAGTAAGGAAACTGTCCTAGAAAGATGCACCTATATGAGTTCCTGATATTTTGCACATAATTTGAGGGATTCTCATTGTGCTATGAAGTCTCTCCACTAATCCTGGGTTAAGGAGGCTCTACGATGTCTGGTATTCCATTTAACAGTGGCTGTTTCATCAGTGCTATGTTTAAAACCCTTATTGTTTCTCTGGAGTTCACTATCATATTTATTTTTTTATAGTATATATTTATATATATATATATATTTTATCTTTATTCAGTATAATTTATATACCATATCCCTCACACATTCAGTATACAATTCAATATTTTCACAGAGTTGAACAACTACCACCACAACCAATTTCTGAATATTTTTATGACCTTGAAAAGAAATCTTATATGCTTTTGGAGTCACCCTCATTCCTCCCCAGTCTCCCCAGTTCTAGGCTTCACTAACCTATCTTCCATCTTTATAAGTTTGCTATTCTGGACATTTCATGTTAATGGAATTATACAATATGTGTCTTTTGTGTCTAGCTTCTTTCACTTAATGCTTTCAGGGTTCATTGATAATGTAGCATACATCAGTACTTCATTCCTTTAAATGATTAAATGGCATTTCAGTGTGGATATACCACATTTTGTATATCTGTTTGTTGGTTGATGGACATTTTGGTTCCTTCTATTTTGGTTTTTATGAGTTTGTGGACATTTATGTACAAGTTTTATGTATGTGTGCATTTGTTAAGTTGCTTCAGTCATGTCCAACTCTTTGCGACCCTATGGACTGTAGCCTGTCAGCTCCTCTGTCCATGGGATTCTCCAGGCAAGAATACTGGAGTTGGTTGCCATGGCCTGCTCCAGGGGATCTTCCCAAGCCAGGAACTGAGCCCATACCTTTTACCCCTGCTGTAATGGCAGGCGGACTCTTTACTACTAGCACCACCTGGGAAGCCCCACAGGTTTTGTATACACATATGTTTTAATTTCTCTTGGGTATATACCTAGTGATAGAATTGTTGGTGGGCTTCCCAGGTCACACAGTGGCAAAGAATCTGCCTGCCAGTGCGAGTGACATAGGAGATGGGAGTTCAATCCCTGGGTCAGGAAGATCCCTGGAATAGGAAATGACAATCCACCCCTGTATTCTTGCTTGGGAAGTTCCAAGGACAGAGGAGCCTGGTAGGCTGTAGTCCATGGAGTCACAAAGAGTCGAACACAACTGAGCCCAGCACAGACAGATGATAACTTTATATTTAACCTTTGAAGGAAGTGTGGCAGATCAAAGTCTTAATGTAAGAACTGAAGCTATAAATCTAGAAGAAAACTTACACGTAAAATTGGCTGCACCATTTTATATACTCACCAGCAGTGTATGAAGCTTACAATTTATTCACATATTTGACAGTGCTTCGAATTATCTGTCTTTTTGATTCTAACCATCCTAGTAGAATCTGATCCATTTTCACATGGATCATGTTGCATCTGTAGATCAGTTAGGGAGTAATGCCATCTTAACTTTTAAGTCTTTCAATAGATGAACATGGGATGTATTTCCATTTATTTAGGTCTTCTTTAATTTCCTTCAGCAAGGTTTTGTATAGGCTAGTTTAGTTTTGATAGGCTATGTGTACATAACCATTGATTCTTCAAATTCACATGAACAGATAGAAATAGCAATAACGGTTTATAAGAACTCTACTCTCCTTCTTGGTCTCAGAGTAATTTTGAGTTGACAAACTTAGAAACTGTATGAAGTTGATGTTACCAATGGGGATAACTACTTTTGTCTATCAGGTACAACTGTGATAGGGTTAAGTCTATCTTAATGGTGTTGGATTGTATAATATTGGGTATGCCACAGGTCACCTGGGGATTATAAGAGCCTTATTAAATTAATGCTAGTCTAGAGGACTGGATATGAAGAAATGATTATTTTTGGTATGCTCATGACCTCTGTAGTCAGTATTTCAGATTGTCCCATTCTTATTATCAATTTTATGTCACATATATCCCTCCTCTAAACCCACCTTAGTTGTCCTTGTGAAGGGCTTTTACTCTCCCAACTTCCAATTTGTGAGAGCTTTATTCAGTCAATTCCTTATTCTGAGCATCTGCACTCATTTCCTCGCCCAAGCTGCCTATTGCCTCACATCTTGGAATACAGTAGTGGCCGGCCCCATTTTGTCTTTGTATGTGGGATAAATAAACTCACTATTTCTTTAAACCACTGTTAACTTTTTTTTTTATTGGTAGGCAAACACAACCTTAATTGATAGAAATGAGCAAATTAGAGCCATATCTTGAAAAATGTTATAAACCAGAATCAAGAGTTTGCAATTCTCTTTTCCTTTTAAACCATTTTATCTGGACTCTGCCTAAAGACACATGAAGAAGTTGAAAATGTGCAAAAGCTAACATAGCAGCACATCCTAGAATATATTACAAAGAAAAAGAATGGATTCACAGAGACTCTTATGTTGGGAAGTCCAGGGCTAGCCATGACGTGTACATTGAACTCAAGTGCCTTCCATTTTTCTTCAGCATATTTAAGTATGTAGGTTTCATCTTTATGTTCAGATACTCATGTTTCAAAATGATGACTGCACCACTTCTACGTCTGTATCTGTGTTTTGACTATGAAGAAAGAAAGAGAGAAACTGGCATCAGCAAGCTCTTTGGTAAGAAGTAGGTTGCTTCACCAGTGTGCCTGCAAAAGAGGCTTGGTGTAGTACTTGTTGTAGTACTGCACTCGAGTGTCTAGGTTTGTTTAGCTTTGTAACAGTGTGTTATTTTGGATTGATTTTAATTATTTATACTGGCAAACTACCAGATAATTACATCAAATAACTTATAG
Seq C2 exon
GAAAAACACAATCAAGAGATGGAGTTTACTTTTGAAAACTTGATAGCATCTGTGTCTGATTTGTTTGGAGCTGGGACAGAGACAACGAGCACCACGCTGAGATATGGGCTCCTCATGCTGCTGAAACACCCAGAGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000037559:ENSBTAT00000040300:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.7=100)
A:
NA
C2:
PF0006717=p450=FE(10.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]