BtaINT0046203 @ bosTau6
Intron Retention
Gene
ENSBTAG00000046805 | CYP2F1
Description
cytochrome P450, family 2, subfamily F, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:2632]
Coordinates
chr18:50345655-50347208:-
Coord C1 exon
chr18:50347067-50347208
Coord A exon
chr18:50345915-50347066
Coord C2 exon
chr18:50345655-50345914
Length
1152 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
CGCGTCCTTTCTCCCTGCAGGAC
3' ss Score
14.18
Exon sequences
Seq C1 exon
GGCACAGATGTCATCACCCTCCTTAATACAGTTCACTATGACCCCAGCCAATTTCTGAAGCCCAAGGAATTCAACCCTGAACATTTTCTGGATGCCAATATGTCCTTCAAGAAGAGCCCTGCCTTCATGCCTTTCTCAGCAG
Seq A exon
GTGAGAGTGGTGGAGGGCAACGGTCAGTCTTTCTGGCCCAATATTCCACCTACATTCCCCAAGCCTAATTCAACTCTCCAAACCCTTTCACTTCTTCATCCCACCCAATCCTCAGCTTTAGATGTGCAGATGTCCTTTCTCCTTCTCAACTCTTCCCCTACAGGCTGATAGCAAATGACAGCCTTGTGGAGGGAGGCAGGGAAACAGGATTGTCATCCAACTTGGACATGGTCATTATCAGGCTCTCCACTGGGTGGTGCAGTTGAAGCGGTTCTGGGTTTTCTTGCCTTTGGTCCTTAAATGGCTGAAAAAAACATCTTTTCCTGCTTAACTCAGTGTTCGAAAAGGTAGTAGGGTGCATAATAATAGGTAACCTACAACATTGCCTACTGTGCGCCAGTGCTACCTCTGAGAACTGTAAGAGTGGTGGCTAAAAGATGCACTTTGCTGCCAGACCCCAGCTTTGTTATATTCTAGTGGCTCGGCCTTGGATATGCTCCTTCCCTTCTCTGTGCTTCGGGTTTTACATCTATGAAATGGTGATCATAAAAAAGCCCACCTCTGGGAGTTGTTATAAGGATGAAATTAATTGATAGTAGGGCTTAGAGCAGCAAGGGCCCACACATACTAAACTAACATAGCATTATATTCTCACTGTTTCACCTCCATTTACCTTTCACAACAACCTGAAAAAAAGTGAAAACGTTAGTTGCTCAGTGGTTTCCAAGCTCCTCTGTCCGTGGAATTCTCCAGGCAATAATACTGGGGTGGGTAGCCATTCCCTTCTCCAAAGGATCTTCCTGACCCCAGGAATCCAACCTGGATTGCAGGCAGATTCTTCACAGTCTGAGCCATCAGGAAAAGTCCCTCATAGCAACCTAATGAAGCACTATTATCCTCCCCATTTCAGATACCTACCCAGAAACTCTGGCTTGCCCAAGATCACATAACTAGTAATGGTAGTCAGGATTCGAATCCCTGCAAGGTTGCACTTGTAGGAGGTCCACAATATACTTAAACTGTCTGTCCCGGACCTTTAGATAGAGGGGTCTGTGAGTCCCCAGTCATTATTCTCATGCTTTCCTCTGAAAGTGGAGGAGGCCCTTCACCCCGTTTTGTCTCATTGCTCCTCCGCGTCCTTTCTCCCTGCAG
Seq C2 exon
GACGCCGGCTGTGCCTGGGCGAGGCGCTGGCGCGCATGGAGCTCTTCCTCTACCTCACCGCCATCCTGCAGAGCTTCTCGCTGCAGCCGCTGGGGGCGCCCGAGGACATCGATCTGACCCCGCTCAGCTCGGGTCTCGGCAATTTGCCCCGGCCTTACCAGCTCTGCGTGCTCGCACGCTGACGCCGCATCCCTTCCAGATTCGTCTGTGAACGATGGGGCCTGTCTGGAGGGGTGCTTCGATCCATCGTCTCGTTCCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046805:ENSBTAT00000063781:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.5=100)
A:
NA
C2:
PF0006717=p450=PD(14.9=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGATGTCATCACCCTCC
R:
GACGAATCTGGAAGGGATGCG
Band lengths:
347-1499
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development