RnoINT0044377 @ rn6
Intron Retention
Gene
ENSRNOG00000032805 | Cyp2f4
Description
cytochrome P450, family 2, subfamily f, polypeptide 4 [Source:RGD Symbol;Acc:2476]
Coordinates
chr1:83946211-83947821:+
Coord C1 exon
chr1:83946211-83946352
Coord A exon
chr1:83946353-83947361
Coord C2 exon
chr1:83947362-83947821
Length
1009 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CGGCCCTCCCACCCATACAGGAC
3' ss Score
8.67
Exon sequences
Seq C1 exon
GGCACAGATGTCATCACGCTCCTTAACACCGTGCACTATGACTCCGACCAATTCAAGACCCCTCAGGAGTTCAATCCTGAGCATTTTCTGGATGCCAATCAATCCTTCAAGAAGAGCCCCGCCTTCATGCCATTTTCGGCGG
Seq A exon
GTAAGAGATGGAGTGAACTTTAATCCTAACCCTACTCTTCTTTTTTTTTTTAAGATTTATTTACTTTGTGTATATTGAGTACACTGTCACTGTCTTCAGACACACCAGAAGAGAGGGCATCGGATTCCATTACAGATGGTTGTGAGTCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTAACCACTGAGCCATCTCTCCAGCCCCTAACCCTACTCTTCAAACCGTCTCGATCTATCCAACCCCCTCCTTGACTTGGCATACAGAAATTTCCCTTTTCTAATTCGGCTCCAAACACCGAGGGGGAAGCCAAGACAATCATTTAAGAATGATTATTTTTTTTAAAGATTTGTTTATTTATTATATATAAGTACACTGTAGCTGTCTTCAGACACACCAGAAGAGGGCATCAGATCTCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCAGAACCTCTGGAAGAACAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTAAGAATGATTATTATCAGAATCTCCACTAGGTGGCGCGGTTAGCTCTGGTTTTCCTTAACGCTACCTTGCAGCGCTGGCGAGGGAAGGATAGCAGGAAGCTTGAAGGAGGCAGGCATTCTAATTACTCTGTACCGGGAGGAGGAAATGAGGACTAAAGTCAGATAAATTGCCTTTTGTGTGCCAGATGCTGCCTCTGAGAAGGGGCAGTGGCTGAGAGTTGGTCTCCGTAGCCAGATCACAGTGGATTGCACCCCAGTTCTGTCCCAGCTGTGGTGATGTTCTGATAAAAGATTTGAACCCAGGCAGTTGCATTCATATTGGCAACTACCTTGGCTTCATTCCCTCCTGTGTCAGTGATAACCCCAATCATTCCCTTCAAATCCACACATTTTCCTCTAAGAATATGGGGTGCAGCCCACACTCTCTTACCTCTCCACTGCTCTCGGCCCTCCCACCCATACAG
Seq C2 exon
GACGCCGACTGTGTCTGGGAGAGCCACTGGCACGCATGGAGCTGTTCATATACCTCACCTCCATTCTCCAGAACTTCACGTTGCATCCGCTGGTGGAGCCTGAGGACATCGACCTGACCCCGCTCAGCTCAGGGCTGGGCAATTTGCCAAGGCCTTTCCAGTTGTGTATGCGCATTCGCTGAGTACTGCACCAGGGGACTGCTCTGGCCCTCTTCCAGGGGTTTCACTGTTGTGGGCCTCCATTGACGTCTCTCTCACGTTCCCTTCCCTAAACCCGGGGCCTGCCACGTGTCGGTACTTTACCCTTCCTATCTTAAGCGCATCTTCATGGAAAAAATGACGTGACAAAGGGGAAATACCCATCTTATACGCACAGACCCTGTTCTGCGATGCACCCTTTTCCTGGCTGTTTGTATCATTTCCTAGTAAATACCTTACTAGTAGATGTGTGTCTGGCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032805:ENSRNOT00000068690:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.2=91.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGACCAATTCAAGACCCCT
R:
GTCAATGGAGGCCCACAACAG
Band lengths:
347-1356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]