BtaINT0046228 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017701 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr25:42306360-42306797:-
Coord C1 exon
chr25:42306656-42306797
Coord A exon
chr25:42306542-42306655
Coord C2 exon
chr25:42306360-42306541
Length
114 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
GGCGCCCCGTCTCTCCGCAGGCC
3' ss Score
11.69
Exon sequences
Seq C1 exon
GGCACACCCGTGCTGGCCCTACTGAACTCCGTGCTCCTGGACGAGACGCAGTGGAAGACGCCCCGCCAGTTCAACCCGGGCCACTTCCTGGACGCCAACGGGCGCTTCGTCAAGCGGCCGGCTTTCCTGCCTTTCTCCGCAG
Seq A exon
GTACTGCAGCCCCTGCCGGCGGTGGCCTGGTCCCCGGGACCTCGGAGCTCAGGGCCCCGCCCTCGGGGCTTCCCCACGGCCTCCGGGACCCACCGGCGCCCCGTCTCTCCGCAG
Seq C2 exon
GCCGCCGCGTCTGCGTGGGGGAGAGCCTGGCCAGGTCGGAGCTGTTCCTCCTGTTCGCGGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCCTCAGCGTCGCCGCCCTGGACACCACGCCTGCCCCTGCCTTCACCGCGCGGCCATCCGCTCAGGTGCTGTGCGCCATGCCCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017701:ENSBTAT00000023544:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=93.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAACCCGGGCCACTTC
R:
CACAGCACCTGAGCGGATG
Band lengths:
243-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]