RnoINT0044442 @ rn6
Intron Retention
Gene
ENSRNOG00000051770 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:RGD Symbol;Acc:1305193]
Coordinates
chr12:17383159-17383578:-
Coord C1 exon
chr12:17383437-17383578
Coord A exon
chr12:17383347-17383436
Coord C2 exon
chr12:17383159-17383346
Length
90 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TGCCTTGGTTTCTCTTGCAGGTC
3' ss Score
12.76
Exon sequences
Seq C1 exon
GGCACCCCCGTGATTCCTTTGCTGACCTCAGTGCTCCTGGACAAGACGCAGTGGGAGACTCCAAGCCAGTTCAACCCAAACCACTTTCTGGATGCCAAGGGATGCTTTATGAAGCGGGGAGCGTTCCTGCCTTTCTCCACTG
Seq A exon
GTAACTTGCTGGCCGTTAGGATGTGCCTCCAACAATTTCTGCTCAGCTCTCTCCTCCAGTAGGGAACCGGTGCCTTGGTTTCTCTTGCAG
Seq C2 exon
GTCGCCGGGTCTGCGTTGGGGAGAGCCTGGCCAGGACAGAGCTCTTCCTGCTGTTTGCTGGCCTCCTCCAGCAGTACCATCTGCTGCCCCCACCCGGCCTCAGCCCCGCAGACCTGGATTTACGGCCTGCCCCAGCTTTTACCATGCGGCCACCCGCCCAGACCTTGCGCGTGGTGCCGAGATCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000051770:ENSRNOT00000091003:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=NA C2=0.081
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCAAGCCAGTTCAACCC
R:
AGATGGTACTGCTGGAGGAGG
Band lengths:
168-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]