HsaINT0044342 @ hg38
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450 family 2 subfamily W member 1 [Source:HGNC Symbol;Acc:HGNC:20243]
Coordinates
chr7:988277-989640:+
Coord C1 exon
chr7:988277-988418
Coord A exon
chr7:988419-988634
Coord C2 exon
chr7:988635-989640
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGCCTGGACATCCCCCGCAGGCC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGCACGCCCGTGATTCCCCTGCTGACCTCGGTGCTCCTGGATGAGACACAGTGGCAGACCCCAGGCCAGTTCAACCCCGGCCATTTCCTGGACGCGAATGGGCACTTTGTGAAGCGGGAGGCCTTCCTGCCTTTCTCTGCAG
Seq A exon
GTCAGCAGCCCTCGGGGCCGGGGTGGGGCGGCACCTCCAGGGCTCCAGGGGTGGGACGGCCCCAGCTCCGCCTGCCGCCTCTGCACCCACCTCCTGATCTCAGGTTCTGAAGGCGGCTGTGGTGGCTGCTCCTGTGCTCCCCTGGGGAGGTCCCCACCCCTCCCCTCCAGGAGCAGGCCTGGTGCAGCCCACTCTGTGCCTGGACATCCCCCGCAG
Seq C2 exon
GCCGCCGCGTCTGTGTTGGGGAGCGCCTGGCCAGGACCGAGCTCTTCCTGCTGTTTGCCGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCGTCAGTCCGGCCTCCCTGGACACCACGCCCGCCCGGGCTTTTACCATGAGGCCGAGGGCCCAGGCCCTGTGTGCGGTGCCCAGGCCCTAGGAGCTCCCCCAGCCCCCAGGTCCTCCTGACCACTCCCCTCCCAGCCCTGGGTCCTCCCACCCTCTCTCCTCCCACCCCACAGCTCGGACTGCTCTGGGAGGGCCCTGAGGACTCCCACCCTCACCCCCACCCCCACAGGGTCAGCAACTGCTTCCGGTTACACCCAGGACTACCCCTGCCCGACCCTGTGGGACCCCCACCCCTCTGATGCTGTCTGCAGCTCAGTCCCTGCCAGCCCCCAGGAGCGCCTCCAGGGCCCCGCCCACTCTCCCACCCCTGAAGCTGCACTCCCACCCACCTAGCTCCCCCCAGGGCCCCCCAGCACCTACAGCTGGGGCTGCAGGGAGACAACGGGTGGCTGCATCCAGCCAGAGACAGGCGCAGGTGGGTGTCCTCAGCGTGCGAGCCCTGCACCCCCCAGGTCCTGGGACTCCTGCAGACCCCACTCCATTCCCGCTCCTGGAACACTTCCTGCAGCTGTGCCTGGAGGCAGTCGGCCTGCAGTGCCAGACTCTGAGCCAAGCCACTGGGGCCATGCGTATGACTGGTGCAGGGAGGCAAGGCCCACATTCTCCTTCAGAGACAGGCACTGGCGCCAGAGGCTTCCTTGGGGCGGGGGGAGGGCACCTCAGCCCCTGAAGACAAGCAGCACTGCAGTGGCAAAAATGGAAACACTGACCCGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCACGAGGTCAGGAGTTCGAGACCAGCCTGCCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067:ENST00000308919:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.201
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(13.1=58.3)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGCACTTTGTGAAGCG
R:
GAGGAGAGAGGGTGGGAGGA
Band lengths:
306-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development