HsaINT0044342 @ hg19
Intron Retention
Gene
ENSG00000073067 | CYP2W1
Description
cytochrome P450, family 2, subfamily W, polypeptide 1 [Source:HGNC Symbol;Acc:20243]
Coordinates
chr7:1027913-1029276:+
Coord C1 exon
chr7:1027913-1028054
Coord A exon
chr7:1028055-1028270
Coord C2 exon
chr7:1028271-1029276
Length
216 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGCCTGGACATCCCCCGCAGGCC
3' ss Score
7.82
Exon sequences
Seq C1 exon
GGCACGCCCGTGATTCCCCTGCTGACCTCGGTGCTCCTGGATGAGACACAGTGGCAGACCCCAGGCCAGTTCAACCCCGGCCATTTCCTGGACGCGAATGGGCACTTTGTGAAGCGGGAGGCCTTCCTGCCTTTCTCTGCAG
Seq A exon
GTCAGCAGCCCTCGGGGCCGGGGTGGGGCGGCACCTCCAGGGCTCCAGGGGTGGGACGGCCCCAGCTCCGCCTGCCGCCTCTGCACCCACCTCCTGATCTCAGGTTCTGAAGGCGGCTGTGGTGGCTGCTCCTGTGCTCCCCTGGGGAGGTCCCCACCCCTCCCCTCCAGGAGCAGGCCTGGTGCAGCCCACTCTGTGCCTGGACATCCCCCGCAG
Seq C2 exon
GCCGCCGCGTCTGTGTTGGGGAGCGCCTGGCCAGGACCGAGCTCTTCCTGCTGTTTGCCGGCCTCCTGCAGAGGTACCGCCTGCTGCCCCCGCCTGGCGTCAGTCCGGCCTCCCTGGACACCACGCCCGCCCGGGCTTTTACCATGAGGCCGAGGGCCCAGGCCCTGTGTGCGGTGCCCAGGCCCTAGGAGCTCCCCCAGCCCCCAGGTCCTCCTGACCACTCCCCTCCCAGCCCTGGGTCCTCCCACCCTCTCTCCTCCCACCCCACAGCTCGGACTGCTCTGGGAGGGCCCTGAGGACTCCCACCCTCACCCCCACCCCCACAGGGTCAGCAACTGCTTCCGGTTACACCCAGGACTACCCCTGCCCGACCCTGTGGGACCCCCACCCCTCTGATGCTGTCTGCAGCTCAGTCCCTGCCAGCCCCCAGGAGCGCCTCCAGGGCCCCGCCCACTCTCCCACCCCTGAAGCTGCACTCCCACCCACCTAGCTCCCCCCAGGGCCCCCCAGCACCTACAGCTGGGGCTGCAGGGAGACAACGGGTGGCTGCATCCAGCCAGAGACAGGCGCAGGTGGGTGTCCTCAGCGTGCGAGCCCTGCACCCCCCAGGTCCTGGGACTCCTGCAGACCCCACTCCATTCCCGCTCCTGGAACACTTCCTGCAGCTGTGCCTGGAGGCAGTCGGCCTGCAGTGCCAGACTCTGAGCCAAGCCACTGGGGCCATGCGTATGACTGGTGCAGGGAGGCAAGGCCCACATTCTCCTTCAGAGACAGGCACTGGCGCCAGAGGCTTCCTTGGGGCGGGGGGAGGGCACCTCAGCCCCTGAAGACAAGCAGCACTGCAGTGGCAAAAATGGAAACACTGACCCGGTGCGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCCGAGGCAGGCGAATCACGAGGTCAGGAGTTCGAGACCAGCCTGCCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAACCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000073067-CYP2W1:NM_017781:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.201
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(13.1=58.3)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAATGGGCACTTTGTGAAGCG
R:
GAGGAGAGAGGGTGGGAGGA
Band lengths:
306-522
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)