GgaINT0015029 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C495]
Coordinates
chr14:2258187-2258784:+
Coord C1 exon
chr14:2258187-2258328
Coord A exon
chr14:2258329-2258593
Coord C2 exon
chr14:2258594-2258784
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
CACGCTGCTTCCATCCACAGGGC
3' ss Score
11.54
Exon sequences
Seq C1 exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
Seq A exon
GTACTCAAAGGCCTCGGCCACACTGAGGGGTCCTCATAGATAATTACTGCCTCTCATTTGGATAATGAGCTCAAGGGTTGGCTCCCAAAGATCCAGCCAGGCAGAGGACCTTTATAGGAAGGAGGGCAGCCCTGTGGTAGGGGGGCGGTAGGGCACTGGCAAAGCAACATTAAATTTGGAGTGAGACATTTTGGTAAACCCACTGTGGACAGGACTTCTCCAGCTTGATACTTCCACCAAGTAAGCACGCTGCTTCCATCCACAG
Seq C2 exon
GGCGAAGGAACTGCATCGGAGAGAGCCTCGCCAAGATGGAGCTGTTTGTCTTCTTTGTAGGGCTGCTGCAGACGTTCACTTTCCAACCTCAGCCGGGAGTTTCAGAGGCCGACCTGGACCTGACCGTCCCCGAAACGACTTTCACATTAAGGCCTCGGCCTCAGGCGACCTGTGCCATCCTGCACGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATCCCATCGCTCACCT
R:
GCCGAGGCCTTAATGTGAAAGT
Band lengths:
294-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]