GgaINT0015029 @ galGal3
Intron Retention
Gene
ENSGALG00000021238 | E1C495_CHICK
Description
NA
Coordinates
chr14:2264842-2265439:+
Coord C1 exon
chr14:2264842-2264983
Coord A exon
chr14:2264984-2265248
Coord C2 exon
chr14:2265249-2265439
Length
265 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTC
5' ss Score
7.04
3' ss Seq
CACGCTGCTTCCATCCACAGGGC
3' ss Score
11.54
Exon sequences
Seq C1 exon
GGTATAATTGTCATCCCATCGCTCACCTCAGTGCTGCTGGATAAGACTCAGTGGGAGACACCACACCAGTTCAACCCCAACCACTTCCTTGATGCTGAAGGGAATTTTGTCAAGAGGGAGGCTTTCCTGCCCTTCTCCACAG
Seq A exon
GTACTCAAAGGCCTCGGCCACACTGAGGGGTCCTCATAGATAATTACTGCCTCTCATTTGGATAATGAGCTCAAGGGTTGGCTCCCAAAGATCCAGCCAGGCAGAGGACCTTTATAGGAAGGAGGGCAGCCCTGTGGTAGGGGGGCGGTAGGGCACTGGCAAAGCAACATTAAATTTGGAGTGAGACATTTTGGTAAACCCACTGTGGACAGGACTTCTCCAGCTTGATACTTCCACCAAGTAAGCACGCTGCTTCCATCCACAG
Seq C2 exon
GGCGAAGGAACTGCATCGGAGAGAGCCTCGCCAAGATGGAGCTGTTTGTCTTCTTTGTAGGGCTGCTGCAGACGTTCACTTTCCAACCTCAGCCGGGAGTTTCAGAGGCCGACCTGGACCTGACCGTCCCCGAAACGACTTTCACATTAAGGCCTCGGCCTCAGGCGACCTGTGCCATCCTGCACGAATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000021238:ENSGALT00000006237:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.9=100)
A:
NA
C2:
PF0006717=p450=PD(13.4=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTCATCCCATCGCTCACCT
R:
GCCGAGGCCTTAATGTGAAAGT
Band lengths:
294-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]