MmuINT0045133 @ mm9
Intron Retention
Gene
ENSMUSG00000029541 | Cyp2w1
Description
cytochrome P450, family 2, subfamily w, polypeptide 1 [Source:MGI Symbol;Acc:MGI:3616076]
Coordinates
chr5:139832560-139832987:+
Coord C1 exon
chr5:139832560-139832701
Coord A exon
chr5:139832702-139832799
Coord C2 exon
chr5:139832800-139832987
Length
98 bp
Sequences
Splice sites
5' ss Seq
CTGGTAACT
5' ss Score
5.45
3' ss Seq
TACATGGGTTTCTCTTGCAGGTC
3' ss Score
11.24
Exon sequences
Seq C1 exon
GGCACTCCTGTGATTCCTTTGCTCACTTCAGTCCTCCTGGACAAGACGCAGTGGGAGACCCCAAGCCAGTTCAACCCAAACCACTTTCTGGACGCGAAGGGGCGCTTTATGAAGCGGGGGGCCTTCCTGCCATTCTCCGCTG
Seq A exon
GTAACTTGCTAGCCTTCGGGGTGTGCCTACACCAGCTTCTGCTCAGCCCTCTCCCCTCCAGGAGCAGGCCTGGCATCTTACATGGGTTTCTCTTGCAG
Seq C2 exon
GTCGCCGGGTCTGCGTTGGGAAGAGCCTGGCCAGGACAGAGCTCTTCCTGCTGTTCGCTGGCCTCCTTCAGCGGTACCGCCTCCTGCCCCCACCCGGCCTCAGCCCTGCAGACCTGGATTTACGGCCTGCCCCAGCTTTCACCATGCGGCCTCCTGCCCAGACCTTGTGTGTGGTGCCGAGATCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029541-Cyp2w1:NM_001160265:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=PD(12.5=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCACTTCAGTCCTCCTGGA
R:
CGAACAGCAGGAAGAGCTCTG
Band lengths:
179-277
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: