BtaINT0046207 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010419 | CYP2R1
Description
Bos taurus cytochrome P450, family 2, subfamily R, polypeptide 1 (CYP2R1), mRNA. [Source:RefSeq mRNA;Acc:NM_001076267]
Coordinates
chr15:38439633-38442160:+
Coord C1 exon
chr15:38439633-38440249
Coord A exon
chr15:38440250-38441830
Coord C2 exon
chr15:38441831-38442160
Length
1581 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
GAACACTTTTTCTCTTACAGGAC
3' ss Score
11.15
Exon sequences
Seq C1 exon
ATATGGCCGAGGATGGGTTGATCACAGAAAATTAGCTGTAAATAGCTTTCGCTGTTTTGGATATGGCCAGAAATCTTTTGAATCTAAAATCTTAGAAGAAACCAAATTTTTCATTGATGCTGTTGAAACATACAATGGTAGCCCTTTTGACTTAAAACAATTAGTAACAAATGCTGTTTCAAACATAACCAATCTGGTCATTTTTGGAGAACGATTCACTTATGAAGACACTGATTTTCAGCACATGATTGAGTTATTTAGTGAAAATGTGGAACTAGCTGCCAGCGCCACAGTCTTCCTCTATAATGCCTTTCCATGGATTGGCATCTTACCTTTTGGAAAACATCAACAACTGTTTAGAAATGCAGCCGTGGTCTATGACTTTCTGTCTAGGCTTATTGAAAAAGCTTCCATCAACAGAAAACCTCAGTTACCTCAGCATTTTGTTGATGCTTATTTAGATGAGATGGAAAGAAGTAAAAATGACCCATCATCTACTTTCTCCAAAGAAAACTTAATTTTCTCTGTGGGTGAACTCATCATTGCTGGAACTGAAACTACAACTAATGTGCTGCGGTGGGCAGTTCTTTTCATGGCCCTTTATCCTAACATTCAAG
Seq A exon
GTGAGGATTCTCATCATCTTAAGATCTGTGCTTACATTTAGGGCTCACACATGTTTTACAGTCTTTGGCTGTATACAAAGCATTTCAGTTAGGAACTCCTGCTATGCTGTCCAAAAAGTGAAGTACTGAATAGCTATAAGGTTTTAAAAACTGTTAATTCATGTAAAAACCTCAGATATAAATCTTACAATACCTGTATTATAAATGAGGGAAAAGGCTAAGTGACTGATTTGCCCACTTCCTTCTAGTTCTAAGCCAGAACCTGAACCCTAGTTTTTTGGGAATTTTTGTTTGTTTGTTTGTTTGTTTTGGTTTGATTTTGGTTACACCACGCAACATCCAGAATCTTAGTTCCCCAACCAAGGATTGAACCCATGCCCTCTGCAGTGGAAACATGTAGTCTTTATAGCTGAACTGCCAGGAAAGTCCCAACCCTGGCTTTTTAAAAATTATTTATTTTTAATTGAAGGATGATTGTTTTACAATATTGTATTGGTTTCTGCCATACATCAACATGAATCAACCATAGGTATACATATGTCCCCTGCTTCTTGAACCTCCCTCCTAACCTCCCACCCCAGCCCACCTCTCTAGGTTGTTACAGAGCCCAGATTTGAATTCCCACTAACTCTTTACATGTGGTAGTCTATATGTTTCCATACTACTCTCCATTTGTCCCACCCTTTCCTTACCCCCAACCCTGTGCCCACAAGTCTGTTTTCCATGTCTGTGTTTCCATTGAAAGTGAAAGTCACTCAGTTGTGCCCAACTCTTTGTGACCCCATGGACTGTATATAGCCCACTTGGCTCCTCTGTCAATGGAATTGACCAGGCCAGAATACTGGAGGGGGATCCCTTCTCCAGGGGATCTTGCCAACCCAGGGATCAAACCCAGGTCTCCTGCCTTGTGGGCAGATTCTTTACTGTCTGAGCACCAGGGAAGCCCCTGAGTCCCCATTGCTGCCCTGCACATAGGTTCATCAGAAACATCTTTCTAGATTCCAGATATATGCATTAATATACAATATTTGTTTTTCTCTTTCAGACTTACCTCACTCTGTATAATAGGCTCTAGGTTCATCCACCTCATTAGAACAGACTCAAATATGTTCCTTTTATTCACTGAGTAATATTCCATTGTATGTGTATGTGTGTGTTTTTATATATATATCTCTCTCACAACTTTTTCCATTTATCTGTTGATGGATATTTGGGTTATTTCCATGTCTTAGCTATTGTGAATAGTGCTGCAATGAACATTACCAACCCTGGTTTTTTTTTTAATTGAAGTTTCTAATGCTTCATTCTTTTCCTTGATGAGAGTAATGTTATTCTAATTCTAGATTTGTTTAATTTTTATTACCTACGTGTGTTTCACAGCACAGTTACTTGGAGTCTCAGGTACTGGTTGTATAAGATATGTGGCATGTATTTAAGTAGAACTCCCAGATAATGAAAAATCTGAATCTGAATGTACCCATGGCATGTTGGCTGGTTATCTTTTGTTTAATCCTAAAGAGAGTTTACTTTAGATATAATTCTAAGAATTGCATAATAATGGGAACACTTTTTCTCTTACAG
Seq C2 exon
GACAAGTTCAGAAAGAGATTGACTTGATTATAGGACCCAGTGGGAAGCCTTCTTGGGATGAAAAGTGCAAAATGCCTTATACCGAGGCAGTTTTGCATGAAGTTTTAAGGTTCTGTAACATAGTGCCATTGGGGATTTTCCATGCAACCTCTGAGGATGCAGTTGTACGTGGTTATTCCATTCCTAAAGGCACAACAGTAATCACAAATCTTTATTCTGTACACTTTGATGAAAAGTATTGGAGAGACCCAGAAATATTCTATCCAGAGCGATTTTTGGACAGCAGTGGACATTTTGCCAAGAAGGAAGCTTTGATTCCCTTTTCCCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010419:ENSBTAT00000039972:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(45.0=100)
A:
NA
C2:
PF0006717=p450=PD(1.2=0.9),PF0006717=p450=FE(62.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATGCAGCCGTGGTCTATGAC
R:
TTCATGCAAAACTGCCTCGGT
Band lengths:
357-1938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development