DreINT0054287 @ danRer10
Intron Retention
Gene
ENSDARG00000056587 | cyp2r1
Description
cytochrome P450, family 2, subfamily R, polypeptide 1 [Source:ZFIN;Acc:ZDB-GENE-110114-1]
Coordinates
chr7:27423926-27424980:+
Coord C1 exon
chr7:27423926-27424555
Coord A exon
chr7:27424556-27424653
Coord C2 exon
chr7:27424654-27424980
Length
98 bp
Sequences
Splice sites
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
3' ss Seq
TTTTTTTCCCTTCCATTCAGAAA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GACTTCTGAACTGCAAATACGGCCGAGGCTGGATTGAGCACCACAAACTGGCTGTGAACTGCTTCCGCTACTTTGGCACTGGCCAGCGGATGTTTGAGAGGATTTCTGAAGAGTGCCTATATTTTCTTGATGCCATTGACCAGCACCAAGGCAAGCCCTTTAACCCCAAGCATCTGGTGACCAATGCGGTGTCCAATATCACCAACCTCATCATCTTTGGCCAGCGCTTCACCTATGACGATGGGGATTTTCAGCACATGATTGAGATCTTCAGTGAGAATGTGGAGCTGGCAGCCAGCAGTTGGGCTTTCCTGTACAACGCCTTCCCCTGGATGGAGTACCTGCCCTTTGGGAAGCACCAGAGGCTGTTCCGCAATGCCAACGAGGTCTATAAGTTCCTCCTGCAAATCATCAGGCGCTTCTCGCAGGGCAGGGTTCCCCAGTCGCCGCAACATTACATTGATGCCTACTTGGACGAAATGGAGCAAAGCACCCCTGATAAAGCCACTTCTTTCTCTCAAGACAATCTGATTTTCTCAGTTGGAGAACTGATCATCGCGGGCACAGAAACCACCACTAATTGTCTGCGCTGGGCTATGCTCTACATGGCTCTGTATCCCAGGATACAAG
Seq A exon
GTTGGTGCCCATGGAGCATGCGCTTATTGTTCATTTATGATCAATGTTTTAATGTCGTTGCGCTAATCACGTCATGTTTTTTTTTCCCTTCCATTCAG
Seq C2 exon
AAAAGGTCCAAATGGAGATCGATAGTGTTCTGAATGGCAGACAGCCTGCTTTTGAAGACAGGCAGAGGATGCCGTATGTGGAGGCAGTGTTGCATGAAGTCCTGCGCCTCTGCAATATCGTCCCACTGGGAATCTTCCGCGCCACGTCTCAAGACGCAGTGGTGCGTGGCTACACCATTCCCAAGGGCACCATGGTCATCACTAACTTGTACTCTGTACACTTTGATGAGAAGTACTGGAGCGACCCGTCAATCTTCTGCCCAGAGCGCTTTCTAGACTGCAATGGCAAATTCATCCGACATGAAGCGTTTCTCCCCTTCTCCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000056587:ENSDART00000079091:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(71.9=98.8)
A:
NA
C2:
PF0006717=p450=FE(24.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGGGCTATGCTCTACATG
R:
GTGGGACGATATTGCAGAGGC
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]