BtaINT0046212 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018240 | CYP2S1
Description
Bos taurus cytochrome P450, family 2, subfamily S, polypeptide 1 (CYP2S1), mRNA. [Source:RefSeq mRNA;Acc:NM_001100366]
Coordinates
chr18:50658440-50658922:+
Coord C1 exon
chr18:50658440-50658600
Coord A exon
chr18:50658601-50658742
Coord C2 exon
chr18:50658743-50658922
Length
142 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
AGCTGTTGTTCTCCCCACAGACC
3' ss Score
11.08
Exon sequences
Seq C1 exon
GACGGCCGTTTGACCCCTCCCTGCTGCTGGCCCAGGCCACCTGCAACATCATCTGCTCCCTAGTCTTCGACCTCCGCCTCCCCTACGACAATGAGGAGTTCCAGGCTGTGGTCCGGGCGGCTGGCGGCATCGCCGTGGGGGTCAGCTCCCCGTGGGGCCAG
Seq A exon
GTAAGTGGCTGGGACCCCTCTCTGGCCACCTTCCCCAAAGGCTCCTGCCCGCCTCTTCCAGGTAACCCCAGAGTGCCCTGTCCGCCTGCCCCTCCACCCTGGTGCAGGGCCCCCATGGAAACAGCTGTTGTTCTCCCCACAG
Seq C2 exon
ACCTACGAGATGTTCTCCCGGTTCCTACAGCGCCTCCCGGGCCCCCACACGCAGCTCCTCCGCCACTTGGGCACCGTGGCCGCCTTCGCCGCCCAGCAGGTGTGGCAGCACAAGGGGAGCCTGGGCACCTCAGGCCCTGTGCGCGATCTCGTGGACGCCTTCCTGCTGAAGATGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018240:ENSBTAT00000024282:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(12.1=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACAATGAGGAGTTCCAGGC
R:
CTTTGCCATCTTCAGCAGGAA
Band lengths:
256-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development