RnoINT0044416 @ rn6
Intron Retention
Gene
ENSRNOG00000020743 | Cyp2s1
Description
cytochrome P450, family 2, subfamily s, polypeptide 1 [Source:RGD Symbol;Acc:1306078]
Coordinates
chr1:82603015-82603434:-
Coord C1 exon
chr1:82603274-82603434
Coord A exon
chr1:82603195-82603273
Coord C2 exon
chr1:82603015-82603194
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
TTGTCTTCCTGTACCCACAGGCC
3' ss Score
11.37
Exon sequences
Seq C1 exon
GACGTCCATTCAACCCTTCCATGCTGCTGGCCCAGGCTACCTCTAATGTTGTCTGTTCCCTCATCTTTGGCATCCGTTTGCCCTATGAAGATAAAGAGTTTCAGGCTGTGATCCAGGCAGCAAGTGGGACCTTGTTGGGGATCAGCTCTCCATGGGGCCAG
Seq A exon
GTAAGTGCTGGAGGCCTTCTCTAGCCCCAAAGCTTCCTGTCAAACGCTCTGGGAATGAGTTGTCTTCCTGTACCCACAG
Seq C2 exon
GCCTACGAGATGTTCTCCTGGCTACTGCAGCCCTTGCCAGGCCCCCACACACAGCTCCAGCACCACTTGGGCACCCTGGCTGCCTTCACTATCCAGCAGGTACAGAGACACCAGGGACGCTCCCACACCTCAGGTCCTGCTCGTGACGTCGTCGATGCCTTCCTGCAAAAGATGGCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020743:ENSRNOT00000028177:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.100
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.5=100)
A:
NA
C2:
PF0006717=p450=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGATCCAGGCAGCAAGTG
R:
GGTGTCTCTGTACCTGCTGGA
Band lengths:
168-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]