BtaINT0046218 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012972 | CYP2U1
Description
cytochrome P450, family 2, subfamily U, polypeptide 1 [Source:HGNC Symbol;Acc:HGNC:20582]
Coordinates
chr6:18517347-18519902:-
Coord C1 exon
chr6:18519267-18519902
Coord A exon
chr6:18517509-18519266
Coord C2 exon
chr6:18517347-18517508
Length
1758 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATA
5' ss Score
8.49
3' ss Seq
TTTTTTTTTTTTTTGTATAGAAA
3' ss Score
8.34
Exon sequences
Seq C1 exon
GGATTGTATTTGCACATTATGGTCCAGTCTGGAGACAACAGAGGAAGTTCTCTCATTCAACTCTTCGTCATTTTGGCTTGGGAAAGCTTAGCTTGGAGCCCAAGATTATTGAGGAGTTCAGATATGTGAAAGAGGAAATGCAAAAGCACGGAGACGCCCCTTTCAATCCTTTCCCCATTGTCAACAACGCCGTCTCTAACATCATCTGCTCCTTGTGCTTTGGTCGGCGCTTTGATTACACTAATAGTGAATTTAAGCAAATGCTTAATTTTATGTCACGAGCATTAGAAGTTTGTCTGAACACCCAGCTCCTCCTGGTCAACATATGCTCCTGGCTTTATTACCTTCCTTTTGGACCATTTAAGGAATTAAGACAGATTGAAAAGGATTTAACCCTTTTCCTTAAAAAAATCATCAAAGATCATCGAGAGTCTTTGGATGTAGAGAACCCTCAGGACTTCATAGACATGTATCTTCTCCATGTGGAGGAGGAGAAGAAAAATAACAGCAATAGTGGGTTTGATGAAGATTACTTATTTTACATCATCGGCGATCTCTTCATTGCTGGCACTGATACCACAACTAACTCTTTGCTTTGGTGCCTCCTGTATATGTCACTGCACCCCAACATTCAAG
Seq A exon
GTAATAAACAGATGTTTTCTTTATTCATGGCAAAACCAGGATATTTAAATCAGGATCAACAACCTTGGTGATCCTGTGGCTCCTATCAATAAGCAACATCTTCAGGCTGGAAAACAAAATGGAAATGCTTGCATCTCATAGGGAATTGGTAAGGTGTTAACAGTGAAACTCCAAGATTCTAGACAGTGGCACTAAGGCCACAGCTTGCATGCATCTGCTCTAAATCTCTACAGGTCTGATTCTGTGTGAAATCTAGGATGAAGAAAGAACTTTAGAGAAGACTCTTTTAGAGTTGAATCATAATCATCTGAACCCATCCATCTTTTTTGAAAGTGAGACCAGAGGCCCAGAGTTCTGTGATTTTCACAAGGTCACAGAGCTAGTTCCACCACATCAATACCAGTAGGTAGTGAATATCAGTGGAAGTTCACAGTGGAAGGACAGGGGGAAGAAGTGTATTCATTTTCCATTGCTCCTACAACAAATAACCACACACTTAGTGACTTAACACAAATTTGTTATCTTAGAGTTCTGTACCTTAGAAGTCTGACACTGTCTCAGTGAGCTAAAATCAAGACATTGGCAGGGCTGCGTGCCTTGCTGGACACTCTGGAGGAGAATCCATCTCCTTGCCATTTCCAGCTTCTTTGGCTGGTGGCCCCATTGCTCCCATTTTGAAGCCAGCAATCTTGTATCTCTCCGACCATTTTTTCGTAGTCATATCTCCCTCTGATTCTAAACTCAACTGGAAAAAGTTCTCCAATTTTAAAACCCATGTAATTAGACTGTGCACACCGAGAAAATCCAGCATAATCTCCCCAGCTTAAGGTCCTTCGTTTAATCCAAGTCCCTTTACCATATAAGATAGCATATTCACAGGTTCTAAGGGATTATGGACATCTTGGGGGACCATTGTCTGCCTACTGTAGGTGGGATTTTGCCTACCTACATTCATTAACTATTGATGAGTAGCAGATTATCCCAAAATTTAGCATCTTAACAACCATTCATTATGTCACATAGTTTCTGAGGATCAGGAGTTTGGAGCAGCTTAGGCTGGATGTTCTGCATAGGATTTCTTAGGAAATTATAATCATGATGGTGGCCGGGGGTGACAAATACCTGTAGACTTGACTAGGACTAGAGGATCCTCTAGCAAGATGATTCACCCACATGACTGCTGGCGGGCCTTACCCTTCAGACCTTGACTTGGCTGCCAGCTTCTCCCAGAATGAATGACTCGAGAGTGAGTGGTCCAGACAAAAGCCATGGTGGTCAACTCTAACCCAAGCTCAGAATGGTCATACCACTACTTCTCCCTATTCTATTGGTAACAGAGACCAGTTTGGTATAAAGTGGGAGGGGACAGCACAAAGATGTGACCACCAAGAAGTGGGGTCACGGGGGGTCATGTTGAGCTGTCACACGTCATCACAGGTAAAAGTTTAGAGAGCCAGTTCTAAGCTGATACGAGAGAGTGATTCAGACTGGTCCTGAATCCAGTGCACCTTCCCCTTGGCCCCTCTGTCTGCTGTGCCATGCTCCATTAAGCGTCCCAGGCTGGTACAGAGTCCCTGGGACCAGCTGCCTCTACTGGGATATCTGAGCGGTGCTTCATTTCACGGAGGCTAAGTCAGCTTCTATTGCCGACTTCCCAGCTGGGCAGGTGTGGTGATGGGAAGTGTGCATGGGAGGGCAGTCTCTCCTGGCTTATCCTTTGGATTCTGCTTTCCTTTTTTTTTTTTTTTTTTTGTATAG
Seq C2 exon
AAAAGATTCATGAAGAAATTGCAAGGGTCATTGGTGCTGACCGCGCCCCCTCCCTCACTGACAAGGCGCAGATGCCCTACACAGAAGCCACCATCATGGAGGTGCAGAGGCTGAGCACTGTGGTGCCGCTCTCCATCCCTCACATGACCTCAGAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012972:ENSBTAT00000017246:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(47.3=100)
A:
NA
C2:
PF0006717=p450=FE(12.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAACATATGCTCCTGGCT
R:
AGCACCAATGACCCTTGCAAT
Band lengths:
358-2116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]